Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6 152 7e-32 seq15 125 1e-23 >seq6 Length=12724418 Score = 152 bits (168), Expect = 7e-32 Identities = 197/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 71056 GATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTT 71115 || ||| || ||| ||||| |||||| || | |||| ||| | | ||| || || Sbjct 10926378 GAACCATTATTTGCTATAATTTCATTTTTCATATTCTCATCCCAAAGATCTCTTTCAGTC 10926319 Query 71116 AAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTG 71175 | | ||| | | ||||||||| || |||||||| ||||||||||| ||||| | | Sbjct 10926318 AGATCTCGTAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCA 10926259 Query 71176 TAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 71235 ||||||||||||||||| ||||| | || ||||||||||| || ||||| ||||| || Sbjct 10926258 TAAATATTACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGAC 10926199 Query 71236 GCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCT 71295 || || |||||||| || | |||| | ||| |||| |||||| ||||| ||| Sbjct 10926198 GCCGTTGGCATAGGGGCGATTAATAAAGAATTCCTAACTCCATGTTTAGCAATTTTTTCT 10926139 Query 71296 TTTAGAGATTCCCAATTCCAAAGATCCGATGG 71327 || ||| | ||| ||||| | ||| | ||| Sbjct 10926138 TTCAGAATTGTCCAGTTCCATAAATCAGTTGG 10926107 Score = 143 bits (158), Expect = 4e-29 Identities = 219/308 (71%), Gaps = 8/308 (3%) Strand=Plus/Minus Query 72095 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 72154 |||||||||||||||| | || | | ||||| | |||||| ||||| || ||||| | Sbjct 10924958 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 10924899 Query 72155 CCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 72214 | | |||| || | ||| |||||||| ||||| | |||| ||| || ||||| || | Sbjct 10924898 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 10924839 Query 72215 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG--CTTCC 72272 |||| | ||||||||| | |||||| ||| ||||| || || || ||| | | || Sbjct 10924838 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACC--AGCTATTGGTGTGCC 10924781 Query 72273 ACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330 || || ||||| | || ||| || || || || || || ||| || | | Sbjct 10924780 TCTTGCTCGAATACAATGTACATT--AAGTCCAATACCACCAGCTGATTTGCTAATAAGT 10924723 Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390 || |||| |||||| |||||||| || || ||||| |||||||| |||| | |||| | Sbjct 10924722 GCACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAA 10924663 Query 72391 AAACAGCT 72398 ||||| || Sbjct 10924662 AAACAACT 10924655 Score = 105 bits (116), Expect = 9e-18 Identities = 236/351 (67%), Gaps = 20/351 (6%) Strand=Plus/Minus Query 71542 ATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTA 71601 ||||| ||||| || ||| | ||| || ||| ||||| |||| ||||||||||| Sbjct 10925705 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCAGGAACTGGATAATAATTC 10925646 Query 71602 ATATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTT----AG 71654 | ||| |||||||| | | ||| | | || ||| |||| | |||| || Sbjct 10925645 ACATCGATAATTTTGTCTAAATTACAAGTAACAATT--TTTGT-----TACTTTTCGCAG 10925593 Query 71655 TTTGAGAAAATCAAATCTCCCAT--CTA----TTACAAACACGTTCAAGGCAACAGATGC 71708 ||| |||||||||| || || || ||||||||| |||| || | || || Sbjct 10925592 TTTTTCAAAATCAAATGTCTGATTACTGGAGTTTACAAACATATTCACTGCGATTGAAGC 10925533 Query 71709 CAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATT 71768 | ||| || || || | |||| | | || |||||||| ||||| || || | ||| Sbjct 10925532 TAAATTGCATACAGCAATTTCATCTGGACTGGAATATTGTACGATTTCTGTACATAAATT 10925473 Query 71769 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 71828 ||| | ||||| || ||||||||||| ||||| || ||||| ||| ||||| Sbjct 10925472 ACTGCTTTTGATCGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTATA 10925413 Query 71829 AAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 71879 ||| || | ||||| || ||||||| ||||| | ||| ||| |||| Sbjct 10925412 AAGCATGTAAGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCA 10925362 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||| ||| |||||||| || || ||||| |||| || ||||| || |||| | Sbjct 10924126 CACTAAAACTTTTCTTTGTTTCTTTATGAAGATTAGATATTGCAATTCTTGCAGCTAATA 10924067 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | |||||||||||||||| ||||| ||| || || |||| ||||| ||| |||| | Sbjct 10924066 TCGCATAATCTGGATGTTTAGTAGTCATAGTTGCGGCAGTTTCAGCTGCAAGATTGTCTA 10924007 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 72920 |||| || || ||||| || ||||| || |||||| Sbjct 10924006 ATTCAACAGTGGTTACACCTGAATATAAACCACTGATAAC 10923967 Score = 95.1 bits (104), Expect = 2e-14 Identities = 122/165 (74%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 || || || || |||||| ||| || |||||| |||||| |||||||| || ||| Sbjct 10925204 TCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGAC 10925145 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 72062 || | |||| ||| |||||||||||||| |||||||| ||||| | ||| ||| || Sbjct 10925144 CATACACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAAAGC-ATAGAA 10925086 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT--ATTCTTTTTA 72105 || ||||| | ||||| || || || ||||| ||| || ||| Sbjct 10925085 TAATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 10925041 Score = 87.8 bits (96), Expect = 2e-12 Identities = 181/269 (67%), Gaps = 8/269 (3%) Strand=Plus/Minus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||||||||| || | ||||| | ||| ||| | | ||||| || || ||||| Sbjct 10924583 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 10924524 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCATTGATG 72512 | ||| || | | |||||| || || |||||| || ||||| |||| |||| Sbjct 10924523 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGGATG 10924464 Query 72513 TATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTAT 72572 | || || || | ||||||||| || || ||||||||||| | || | ||| Sbjct 10924463 G----CAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACTACTTTCCCTTGTAT 10924408 Query 72573 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 72632 ||| || || || | |||| | || || |||||||| || || || |||||||| Sbjct 10924407 TTTTAATAAATAACTTCTTTCAAGTGTCTTGAAACCAAAGTAATTATAACTAAAGTCTCT 10924348 Query 72633 TTCGTAAATAATAACCGAATTGAGTTTAT 72661 || ||||| || | ||||| | |||| Sbjct 10924347 ATCATAAATTATCGCAGAATTTAACTTAT 10924319 >seq15 Length=11467329 Score = 125 bits (138), Expect = 1e-23 Identities = 172/240 (72%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 42324 TATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGG 42383 ||||| | | ||||||||| ||||| | | ||||||||||| || | ||||| |||| Sbjct 5182329 TATCTGTGATATATGTATCAATCAACATAGAGTACATTTCTGAGTGCACATTTTCTATGG 5182270 Query 42384 CCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTT 42443 | | ||||| || |||||||| | |||||||| || ||||||||| || |||||||| Sbjct 5182269 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCTTGACTAAATCGTT 5182210 Query 42444 CAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 42503 | | | || || || || ||||| ||| || ||||| || || || ||||| || Sbjct 5182209 CGACGAGGTTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATA 5182150 Query 42504 TAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC---TTTAGATATAT 42560 | |||| ||| || || |||| | |||||| ||| ||||| | |||||||| Sbjct 5182149 TGAAATGTTTCTCATCACTATTTAAATGATTCCAGTCAAATATATCCTGTGAAGATATAT 5182090 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 ||||||| | ||| ||||| || || ||||||||||||||||| || ||||||||||| | Sbjct 5182034 CTTTAGAAAGATCCACTTCCTCGACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 5181975 Query 42609 TCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 ||| || ||| | |||| || || || | |||||||||| ||||||| Sbjct 5181974 GCCAAATGTCAGGCCATTGGATAGGAAAGACAACAAATCTACGTGGATTT 5181925 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41861 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATAT 41920 ||| ||| |||| | | || ||||| | || |||||||| || | ||||| |||||| Sbjct 5183082 TTACAAACCTTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATAT 5183023 Query 41921 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 41980 ||| | | ||| ||||||||||| | || ||| || | ||| | || | |||| Sbjct 5183022 TGACACATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCGTCCGTTAAAAAT 5182963 Query 41981 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG--TG 42038 ||||||||||| ||| || ||| | ||||| || | || || | ||| | Sbjct 5182962 TCTTGTTCAATTTTGACAGCATCTTTAATAATTGACGTGACCCGATCGCAAGACGGTTTT 5182903 Query 42039 GATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 42089 |||||| |||||| ||||| |||||||||||||| || || | |||| Sbjct 5182902 TGTACAAT--ATGTTTGAACATTAAACATGCGAAATCACAATGTAATCCCT 5182854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671092144752840