Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1 132 3e-26 seq41 123 2e-23 seq172 109 4e-19 >seq1 Length=17153651 Score = 132 bits (146), Expect = 3e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || |||||||| || ||||| ||||| || ||||| ||||| ||| |||| | Sbjct 7345507 TCTCAACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCC 7345448 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||||| |||||||||||| | |||||||| || ||||| ||||| || ||||| Sbjct 7345447 ATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTT 7345388 Query 15268 GTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 ||| || || ||| || ||| | ||||| || ||| | || || || ||||||| Sbjct 7345387 TTCATGGATCTTAGCT-TTCACATTCTCTATTGTGTCGGGAACATCAACTTCCAAGGTAA 7345329 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| |||||| || || ||||| ||| | || ||||| Sbjct 7345328 TGGCTTTACCAGTAAGCGTTTTAACAGAGATCTGCAT 7345292 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || |||||||| || || ||||| || ||||| ||||| ||| |||| | Sbjct 7345279 TCTCAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCGAAAGAGTTCTTCC 7345220 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||||| |||||||||||| | |||||||| || ||||| ||||| || ||||| Sbjct 7345219 ATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTT 7345160 Query 15268 GTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 ||| || |||||| || ||| | ||||| || || | ||| || || | |||| Sbjct 7345159 GTCTTGGATCTTTGCT-TTAACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAA 7345101 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | ||||| ||||| | ||||| || || || ||||| || Sbjct 7345100 TAGTTTTCCCTGTTAAGGTTTTAACGAAGATCTGCATGTT 7345061 >seq41 Length=919255 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| | ||| || || |||||||| |||||||| || | | | | ||||| ||||| Sbjct 762331 ATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAAAGTGTGCGCCCATCTTCCAATTG 762390 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC-ACAAATTT 15278 ||| |||||| | ||||| | |||||||| ||||||||||| ||||| || ||| Sbjct 762391 TTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGAATTTT 762450 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 |||| || ||| | || || ||||| | ||| || || | || || ||||| |||| Sbjct 762451 TGCT-TTCACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATTGTTTTTCCTG 762509 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 | || |||||||||||||||||||| Sbjct 762510 TAAGGGTTTTTACAAAAATTTGCAT 762534 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | | ||| | |||||| || || || ||||| || || ||||| Sbjct 762536 CCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCAGAG 762595 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | |||||| ||||| | ||||| | ||||||||| || Sbjct 762596 AGTGTACGTCCATCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGAGGG 762655 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| |||||| ||| || || | || || |||||| | ||| || Sbjct 762656 ATTCCTTCCTTGTCTTGAATTTTTGCT-TTCACGTTCTCAATAGTATCGGAAGCTTCAAC 762714 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || || ||||| ||||| || || || || |||||||||||| Sbjct 762715 TTCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCATA 762763 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| || || || ||||| || || |||||| || | | ||||||| | ||| Sbjct 762787 ATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAGAGCGTACGTCCGTCTTCAAGTTG 762846 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC-ACAAATTT 15278 || ||||| | ||||| | |||||| || ||||||||||| ||||| || ||| Sbjct 762847 CTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTGTCTTGAATTTT 762906 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 |||| || || | || || |||||| | ||| || || | || || ||||| |||| Sbjct 762907 TGCT-TTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTG 762965 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 |||| || || || || || ||||| Sbjct 762966 TCAGTGTCTTGACGAAGATCTGCAT 762990 >seq172 Length=1724251 Score = 109 bits (120), Expect = 4e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 ||||||| || || ||||| ||| | | | ||||| ||||| || ||||| | | Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1092351 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATT 15292 | | |||||| || || |||||||||||| ||||| ||||| ||| |||||| || Sbjct 1092350 TAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCT-TTTACATTT 1092292 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 || || ||||| |||||| || | ||| ||||||||||| |||| |||||| ||| Sbjct 1092291 TCAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACA 1092232 Query 15353 AAAATTTGCATATT 15366 || || ||||| || Sbjct 1092231 AATATCTGCATCTT 1092218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362154441543069