Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq41 100 2e-16 >seq41 Length=919255 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||| | |||||| || || || |||||||||||||||||||| | || | || || Sbjct 762325 CACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAAAGTGTGCGCCCATCTTC 762384 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 |||||| || ||| || || || | || ||||| | || || ||||| || || Sbjct 762385 CAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTG 762444 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 ||| ||| || | | ||| || || | || ||| || |||||||| ||||| Sbjct 762445 AATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATTGTTTT 762504 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| ||||| |||||||| ||||||||||| Sbjct 762505 TCCTGTAAGGGTTTTTACAAAAATTTGCAT 762534 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 ||||| || ||||| ||||| |||||||| | | || || |||| ||| || ||| Sbjct 762566 GTCGATTCCTTTTGAATATTATAATCAGAGAGTGTACGTCCATCTTCCAGTTGTTTACCA 762625 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 ||| || || | ||| ||||| | || || ||||| || || ||| ||| Sbjct 762626 GCAAAGATCAACCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCTTGAATTTTTGCTTTC 762685 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || | | ||| || ||| | || ||| || |||||||| ||||| || ||||| || Sbjct 762686 ACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGAGTTATAGTTTTCCCTGTAAGGGTC 762745 Query 33353 TTTACGAAAATTTGCAT 33369 || |||||||||||||| Sbjct 762746 TTGACGAAAATTTGCAT 762762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318755808462882