Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq41 105 6e-18 >seq41 Length=919255 Score = 105 bits (116), Expect = 6e-18 Identities = 203/299 (68%), Gaps = 13/299 (4%) Strand=Plus/Plus Query 19922 TAAAACATGTGtttaatttaataaattttattataaaattta---------aatatattt 19972 ||||| || ||||| ||||| | || | ||| | ||||| | |||||||| Sbjct 762239 TAAAAAATTTGTTTTATTTACTTGATATAATTTTTAAATTAAGGTGCGAACAATATATTA 762298 Query 19973 tatcattttCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTG 20032 ||||| || ||||| | | | ||| | ||| | || ||||| |||||||| ||| Sbjct 762299 AATCATCGGCCACCTCGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTG 762358 Query 20033 TAATCGCCCATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTT 20090 ||||| | ||| | | ||||||||||||||| || || | || | |||||||| Sbjct 762359 TAATCAG--AAAGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTT 762416 Query 20091 GATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGC 20150 | || || | ||||| ||||| ||||||| |||||| | ||| || ||| Sbjct 762417 GGTCTGGAGGAATTCCTTCCTTGTCTTGAATTTTTGCTTTCACATTCTCAATAGTATCAG 762476 Query 20151 CAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || ||| ||| | || || ||||| || || | ||||| ||||||||||||||| Sbjct 762477 AAGCTTCAACTTCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 762535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419558517150129