Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq15 86.0 5e-12 >seq15 Length=11467329 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 ||||| ||||| ||||| | ||||||||||| || | |||||| || || | ||| Sbjct 5182321 ATATATGTATCAATCAACATAGAGTACATTTCTGAGTGCACATTTTCTATGGCGACTTGA 5182262 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAA 13539 |||||||| ||||| | ||||| | ||| || ||||| || | ||||| ||| | | Sbjct 5182261 AAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCTTGACT-AAATCGTTCGACGAG 5182203 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC 13578 ||| || ||||| || || ||| ||| ||||| || || Sbjct 5182202 GTTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGC 5182164 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||| || ||||| || |||||| || || ||||| | |||| |||||| Sbjct 5182659 TCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTTTTTTC 5182600 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| || ||||||||||| ||| ||| || || ||||| ||||| ||||| || Sbjct 5182599 AGCCAGAAAATAGCAGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAAATGCA 5182540 Query 13295 ATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCT 13354 | || | |||| | | ||| | | | | | ||||| ||| ||||| || ||| Sbjct 5182539 ACCACACGTTCAGGAAATGTAGCACTCTCATGATTGATCCAATTTAACGCCCAATTAGCT 5182480 Query 13355 TTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396 |||| |||||| | |||||| || || || || ||| Sbjct 5182479 TTTTTCGCAACGCATGGTAAATTTTCAATCGCATTGAACAAA 5182438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430952938177818