Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq41 167 5e-36 seq172 161 2e-34 seq1 161 2e-34 seq14 134 3e-26 seq10 98.7 2e-15 >seq41 Length=919255 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || | ||| || ||||| | || ||||| || ||||||||||| ||| Sbjct 762533 ATTCCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCA 762592 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| |||||||| |||||||| || | ||| ||||| || ||| Sbjct 762593 GAGAGTGTACGTCCATCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGA 762652 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || ||||| |||||||| || || || | |||||| || ||| Sbjct 762653 GGGATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCA 762712 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| || || ||||| || || || || || ||||| Sbjct 762713 ACTTCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||| || ||||||||||| || || || || | ||||| Sbjct 762778 AAGGACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAGAGCGTACGTCCGTC 762837 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||| ||||||||||| || | ||| |||||||| || || |||||||| || || Sbjct 762838 TTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTGTC 762897 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||| |||||||| || || || | |||||| || ||| || || ||||| ||||| Sbjct 762898 TTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGTGTGATAGT 762957 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || |||||||| Sbjct 762958 TTTTCCTGTCAGTGTCTTGACGAAGATCTGCAT 762990 Score = 159 bits (176), Expect = 8e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || |||| || | ||| || ||||| || || ||||| || || ||||| || ||||| Sbjct 762308 CCACCTCGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAA 762367 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || || | || ||||| | |||||| ||||| || || | ||||||||| || ||||| Sbjct 762368 AGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGA 762427 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||| || || ||||| |||||||| ||||| || | ||||| || ||| || Sbjct 762428 ATTCCTTCCTTGTCTTGAATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACT 762487 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || || ||||| ||||||||||| || |||||| Sbjct 762488 TCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 762535 >seq172 Length=1724251 Score = 161 bits (178), Expect = 2e-34 Identities = 156/199 (78%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| ||||||||||| || || ||||| | || ||||| | ||| ||||||||||||| Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1092351 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || | || |||||||| || |||||||| || ||||| || || ||||||||||||| Sbjct 1092350 TAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTT 1092291 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | ||||| | |||||| || || || || || |||||||| | ||||| |||| Sbjct 1092290 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1092231 Query 104550 ATATCTGCAT-TTTGTGTA 104567 |||||||||| || ||||| Sbjct 1092230 ATATCTGCATCTTGGTGTA 1092212 >seq1 Length=17153651 Score = 161 bits (178), Expect = 2e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || || | |||| ||| |||||| |||||||| || ||||| || Sbjct 7345293 ATTCCTCCGCGAAGTCTCAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCC 7345234 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || |||||||||||||| |||||||| || | | ||| || || ||| Sbjct 7345233 GAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 7345174 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| || || ||||||||||| ||||| |||| || || || ||| Sbjct 7345173 GGAATACCCTCTTTGTCTTGGATCTTTGCTTTAACATTCTCTATTGTGTCAGAAGCTTCA 7345114 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || |||||||| || || || | ||||| || || |||||||| ||| Sbjct 7345113 ACTTCAAGAGTAATAGTTTTCCCTGTTAAGGTTTTAACGAAGATCTGCATGTTG 7345060 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| | ||| || |||||||| || ||||| || || |||||||| || |||||| Sbjct 7345500 ACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATCTTCT 7345441 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||||||| |||||||| || | | ||| || || ||||| || || ||||| || || Sbjct 7345440 AGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTTTCATGG 7345381 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| ||||| ||||| |||| || ||| | || || || | ||||| | ||| Sbjct 7345380 ATCTTAGCTTTCACATTCTCTATTGTGTCGGGAACATCAACTTCCAAGGTAATGGCTTTA 7345321 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||||||| ||||| ||| | ||||||||| Sbjct 7345320 CCAGTAAGCGTTTTAACAGAGATCTGCATT 7345291 >seq14 Length=11649563 Score = 134 bits (148), Expect = 3e-26 Identities = 106/127 (83%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||||| | || |||| ||||||||||||||| |||||||||||||| || || Sbjct 1883927 TCCACCTCTTAAACGTAGCACTAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGA 1883868 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || ||||||||| || |||| ||||||||||||||| |||| || |||||||| || || Sbjct 1883867 TAAAGTTCTACCATCCTCTAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGG 1883808 Query 104452 TATTCCT 104458 |||||| Sbjct 1883807 AATTCCT 1883801 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||||||||||||||| |||||||| |||||||| | ||||| | || ||||| Sbjct 1883446 CCTTCTTTATCCTGAATTTTTGCTTTAACATTTTCGATAGTATCTGATGCCTCGACCTCA 1883387 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || |||||||| || || | || || |||||||||||||| Sbjct 1883386 AGAGTGATAGTCTTGCCTGTTAAAGTCTTCACAAATATCTGCAT 1883343 >seq10 Length=13618662 Score = 98.7 bits (108), Expect = 2e-15 Identities = 171/245 (70%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 238527 AATGATAGAAGAAAATATATTTACTCTTTAAAACAGCTCGAGAGAGCCGAAACTCACGAT 238586 || |||| |||||||||||| || ||||||| ||| | || | | |||| || ||| Sbjct 10007089 AAGGATACAAGAAAATATATATATTCTTTAAGTCAGTTGGAAAACTCTAAAACACATGAT 10007148 Query 238587 CCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTA 238646 |||||||| | || | |||||| ||| | ||| ||||||||| | |||||| Sbjct 10007149 GATTTATGGAATGCATGTCAAAATCAAATGATAATAACAGGAAAAATGCATGGATTCTTA 10007208 Query 238647 CGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGA 238706 ||||||||||||| ||||| || | ||||||||| | | || || ||| ||||| Sbjct 10007209 AGAATGTATTGGGCAAAAAAATTATTAGAATGGACTGAAACACCTGAGATTGCT-TTAGA 10007267 Query 238707 TATAG--TATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACG 238764 || | | |||| | || |||| ||| |||| ||| ||||| || || || | Sbjct 10007268 -ATGGGCCAATTATTTAAATAATAAGTACAGTATCGATGGTTGTGATCCGAATGGTTATG 10007326 Query 238765 TAGGT 238769 ||||| Sbjct 10007327 TAGGT 10007331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151315654394172