Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq16 143 3e-29 seq12 120 4e-22 seq382 84.2 3e-11 >seq16 Length=5274633 Score = 143 bits (158), Expect = 3e-29 Identities = 159/213 (75%), Gaps = 12/213 (6%) Strand=Plus/Plus Query 164715 TAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGG--- 164771 |||| ||||||| | ||| |||||||||| || |||||| |||||||| || || Sbjct 2700164 TAGTGGATTACATATAATTATTTTTGATGAAATTGATGCTATTTGCAAATCTCGAGGGAG 2700223 Query 164772 ------TGATAATATTA---TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGA 164822 || |||| |||||||| | || || |||||||||||| | |||||||| Sbjct 2700224 TGTTGCTGGAAATACAGGAGTTCATGATACTGTCGTAAATCAGTTGCTTGCAAAAATAGA 2700283 Query 164823 TGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAAT 164882 |||||| || |||||||||||| | || | |||||||| ||| ||| ||| | || Sbjct 2700284 TGGTGTGGAGCAGTTAAATAATATTCTTGTTATTGGTATGACTAACAGACGAGATATGAT 2700343 Query 164883 TGATGATGCTTTATTACGACCTGGTCGATTAGA 164915 |||||| |||||| ||||||||||| ||||||| Sbjct 2700344 TGATGAAGCTTTACTACGACCTGGTAGATTAGA 2700376 >seq12 Length=12868931 Score = 120 bits (132), Expect = 4e-22 Identities = 154/213 (72%), Gaps = 12/213 (6%) Strand=Plus/Plus Query 164715 TAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGA 164774 |||| ||||||| | ||| ||||||| || || |||||| |||| ||| || ||| Sbjct 8114203 TAGTGGATTACATATAATTATTTTTGACGAAATTGATGCTATTTGTAAATCTCGAGGTAG 8114262 Query 164775 TAAT------ATTA------TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGA 164822 | | | || |||| ||| | || || ||||||||||| | |||||||| Sbjct 8114263 TGTTGCCGGAAATACAGGGGTTCACGATACTGTTGTAAATCAGTTGCTCGCAAAAATAGA 8114322 Query 164823 TGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAAT 164882 ||||||||| ||||||||||| | || | |||||||| ||| || ||| | || Sbjct 8114323 TGGTGTAGAGCAGCTAAATAATATTCTCGTTATTGGTATGACTAACAGAAGAGATATGAT 8114382 Query 164883 TGATGATGCTTTATTACGACCTGGTCGATTAGA 164915 |||||| |||||||||||||||||| || |||| Sbjct 8114383 TGATGAAGCTTTATTACGACCTGGTAGACTAGA 8114415 Score = 100 bits (110), Expect = 3e-16 Identities = 211/312 (68%), Gaps = 6/312 (2%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| | || || |||||||| | ||||| ||||| |||||| | |||||| Sbjct 8113800 ATTGGGACTTCCAAAAAATGGGAATTGGTGGTTTAGATAAAGAATTCAGTGCTATTTTTC 8113859 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 | | |||||||| || || |||| ||||| | | |||| || ||||||| Sbjct 8113860 GGAGGGCATTTGCATCACGAGTTTTTCCACCAGAAATTGTTACTCAATTGGGTTGTAAAC 8113919 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || | |||||||||||| | |||| || || ||| |||||||| |||||||| || Sbjct 8113920 ATGTGAAAGGAATTTTACTTTATGGCCCACCAGGTACAGGTAAAACGTTAATGGCACGGC 8113979 Query 164573 GCATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | | | ||||| | | || || |||||| || ||||| ||| | | | Sbjct 8113980 AAATAG-GGACTATGTTAAATGCTAGAGAACC--TAAAATCGTCAATGGCCCTCAGATTT 8114036 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 || | |||||||| || || ||||||||| ||||| || ||| || ||||||| Sbjct 8114037 TGGATAAATATGTTGGAGAAAGTGAAGCTAATATTAGACGATTATTTGCTGATGCTGAAG 8114096 Query 164690 AAGAACAAAAGA 164701 | || | |||| Sbjct 8114097 AGGAGGAGAAGA 8114108 >seq382 Length=5783 Score = 84.2 bits (92), Expect = 3e-11 Identities = 171/245 (70%), Gaps = 18/245 (7%) Strand=Plus/Minus Query 6910 TATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGAT 6969 || ||||| || | |||||| || | ||| || ||||| || | ||||| || || | Sbjct 1443 TAAGTTAACAAAGAATAAGATGCGATATTGAATGGTACGCCAAGACCCATGTCAGCGCTT 1384 Query 6970 CTTTGATAACATTGACAAGATAAAAT---ATTGTCTATAGCATAAAATTGACACAATACA 7026 ||||||||| |||||| ||||| ||||| | |||||||||| |||| ||| Sbjct 1383 CTTTGATAAAGTTGACATGATAACTCTCCATTGTTCA---CATAAAATTGG-ACAAGACA 1328 Query 7027 -TGACATGGAGGTAAAACAGCCTGATCT---ATATCAGATGGATTCCAAGCAGTCATTAA 7082 ||||| ||||||| | ||| ||| || || ||| ||||| || | ||||| Sbjct 1327 GTGACAGGGAGGTAGA---GCCATTTCTGAAATGTCGCCTGGGTTCCATGCTGACATTAT 1271 Query 7083 AATACGTCTATCATTTGGA-TTTGTTTTTAATTTTGT-TATAATTATTTGTAATTGATCT 7140 ||| ||||||||||| ||| |||| | || || | ||| || || ||| |||||| Sbjct 1270 AATTCGTCTATCATTGGGAGAATGTTGT--ATCTTATCTATGATCTGTTTTAACTGATCT 1213 Query 7141 ATACC 7145 || || Sbjct 1212 ATTCC 1208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595830221924400