Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq8 273 1e-68 seq4517 185 5e-42 seq3902 183 2e-41 seq4532 156 2e-33 >seq8 Length=9733834 Score = 273 bits (302), Expect = 1e-68 Identities = 427/599 (71%), Gaps = 19/599 (3%) Strand=Plus/Plus Query 3550 TGCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTCGTATTTAC---ACGATTGAA 3606 |||||| ||||||||||| || ||| ||| ||||| | ||||| || | ||| Sbjct 8491502 TGCTGTTAAAATGGCAAATATAGATAGAGCATGTAATTTTATGTTTACTAAACCA--GAA 8491559 Query 3607 TGAT--GGATCAAATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTC 3664 | | || ||||| || |||| ||||| || || || ||||| ||||||||||| Sbjct 8491560 GGTTTGGGGGACAATGAGCTGCTATACTTTGCAGATGTTTGTGCTGGACCAGGTGGTTTT 8491619 Query 3665 AGTGAATATATGTTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGC 3724 ||||||||| | ||||| ||||||||||| | ||||| | |||| | || ||| Sbjct 8491620 AGTGAATATGTTCTATGGCGAAAGAAATGGCGTGCTAAAGGATTTGGTCTTACTTTAAAG 8491679 Query 3725 GaaaaaaaTGATTTTCAACTGAACAGATTTTA---CGATAACTTTTCGGAAACTTTACAC 3781 | |||||||||| ||| | | |||||||| || ||| | ||||| || || Sbjct 8491680 AATGAAAATGATTT-CAAATTAGCAGATTTTTATGCGGGTCCTTGT--GAAACATTTCAT 8491736 Query 3782 CCGTATTATGGTCCGCTTAACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTT 3841 || |||||||| || | ||||| || | | | || | ||||| | ||| || Sbjct 8491737 CCATATTATGGACCAAAAGAAAATGGTGATGTTTTTGACCCAGATAATCA-AGAGGCATT 8491795 Query 3842 TGTGAAA-TGATTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGG 3900 | || | || ||| | ||||| || ||||| ||||||||||||||| |||| || Sbjct 8491796 TACAAATCTTATAATGCACCATACCCGTGGCAAAGGAGTACATTTTATGATGTCTGATGG 8491855 Query 3901 TGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTT 3960 || || || || ||||| |||||||| || || ||||| | || ||| | ||||| | Sbjct 8491856 AGGATTTTCTGTAGAGGGGCAAGAAAACATACAGGAAATTCTTTCAAAACAATTGTATCT 8491915 Query 3961 GTGTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATT 4020 |||||||||||||| ||||||||||| || || |||||||||| ||| | ||||| Sbjct 8491916 TTGTCAATGTTTAATGGCATTGATGATTGTAAGAGAGGGTGGTCATTTTGTGACAAAATT 8491975 Query 4021 TTTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGAT-CTTTTA 4079 || || | |||||||| ||||||||||||||||| || | |||||| | | |||| | Sbjct 8491976 ATTTGACCTTTTTACACCCTTTAGTGCTGGTTTAGTTTACATAATGTATCGTTGCTTTGA 8492035 Query 4080 ATCGTA-TTTGTATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTT 4137 | | | |||||||||| |||||| |||| || |||| || ||||| ||| | || || Sbjct 8492036 A--GAAGTTTGTATTTTTAAACCAAATTCTTCTAGACCAGCAAATTCAGAACGTTACTT 8492092 >seq4517 Length=655 Score = 185 bits (204), Expect = 5e-42 Identities = 337/486 (69%), Gaps = 13/486 (3%) Strand=Plus/Minus Query 3624 TGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATGTTATGGA 3683 || |||| ||||| || ||||| ||||| ||| | ||||| ||||||||| | ||||| Sbjct 482 TGCTATACTTTGCAGATGTATGTGCTGGACCATGAGGTTTTAGTGAATATGTTCTATGGC 423 Query 3684 GAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaaaaaaTGATTTTCAAC 3743 |||||||||| | ||||||| |||| | || || | || ||||||| ||| Sbjct 422 GAAAGAAATGACGTTCTAAAGGTTTTGGTCTTACTTTTAAAAATGAACATGATTT-CAAA 364 Query 3744 TGAACAGATTTTA---CGATAACTTTTCGGAAACTTTACACCCGTATTATGGTCCGCTTA 3800 | | ||||||| || ||| | ||||| || || || || || || || | Sbjct 363 TTAGAAGATTTTTATGCGGGTCCTTGT--GAAACATTTCATCCATACTACGGACCAAATG 306 Query 3801 ACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAAA-TGATTATGAAA 3859 | ||||| || ||| | ||| | ||||| | ||| |||| || | || || | Sbjct 305 AAAATGGTGATGTCTTTGACTCAGATAATCA-AGAGGCATTTGCAAATCTTATAATACAG 247 Query 3860 GATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGT 3919 ||||| | || ||||| ||||||||| ||||| |||| || || || || || || | Sbjct 246 CATACCCATGGCAAAGGAGTACATTTTGTGATGTCTGATGGAGGATTTTCAGTAGAACGA 187 Query 3920 CAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTC-AAT----GTTTAA 3974 | ||||||||| |||||||| | || ||| | ||| | | ||| ||| |||||| Sbjct 186 CCAGAAAATATACAAGAAATTCTTTCAAAACAACTGTTTCTTTGTTTAATAGCAGTTTAA 127 Query 3975 TTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTA 4034 | ||||||||| | | || || ||| ||| ||| | ||||| ||| | | |||| Sbjct 126 TAGCATTGATGGTTGGAAGAGAGGGAGGTGATTTTGTGACAAAATTATTCAACCTTTTTA 67 Query 4035 CACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTATTTGTATTT 4094 |||| ||||||||||||||||| ||||| |||||| | | ||| | ||||||||| Sbjct 66 CACCCTTTAGTGCTGGTTTAGTTTATTTAATGTATCGCTGGTTTGAAGAAGTTTGTATTT 7 Query 4095 TCAAAC 4100 | |||| Sbjct 6 TTAAAC 1 >seq3902 Length=920 Score = 183 bits (202), Expect = 2e-41 Identities = 364/524 (69%), Gaps = 20/524 (4%) Strand=Plus/Plus Query 3624 TGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATGTTATGGA 3683 || |||| ||||| || ||||| ||||| |||| ||||| ||| || || | | ||| Sbjct 346 TGCTATACTTTGCAGATGTATGTGCTGGAGCAGGAGGTTTTAGTAAACATGTTCTGTGGC 405 Query 3684 GAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaaa---aaaTGATTTTC 3740 |||||||||| | ||||| | || | | || ||| ||||| | ||||||| | Sbjct 406 GAAAGAAATGACGTGCTAAAGGATTTGATCTTACTTTA---GAAAATGAACATGATTT-C 461 Query 3741 AACTGAACAGA-TTTTA--CGATAACTTTTCGGAAACTTTACACCCGTATTATGGTCC-G 3796 || | | ||| ||||| || ||| | ||||| || || || || || || || | Sbjct 462 AAATTAGAAGACTTTTATGCGGGTCCTTGT--GAAACATTTCATCCATACTACGGACCAG 519 Query 3797 CTTAACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAAA-TGATTAT 3855 || | |||| || ||| | || | ||| | | ||| ||| || | || || Sbjct 520 AGGAAAG-TGGTGATGTCTTTGACCCAGATAATGA-AGAGGAATTTACAAATCTTATAAT 577 Query 3856 GAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGA 3915 | | ||||| | || ||||| |||||||| ||||| |||| | || ||||| || || Sbjct 578 GCAGCATACCCATGGCAAAGGAGTACATTTGGTGATGTCTGATTGAGGATTCTCAGTAGA 637 Query 3916 GGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAAT 3975 | ||||||||| | |||||||| | || ||| | ||||| | |||| ||||||||| Sbjct 638 ACGACAAGAAAATGTACAAGAAATTCTTTCAAAACAACTGTATCTTTGTCGATGTTTAAT 697 Query 3976 TGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTAC 4035 ||||||||| | | || |||||| ||| ||| ||||| ||| | | ||||| Sbjct 698 AGCATTGATGGTTGAAAGAGAGGGTGGTGATTTTGTGTCAAAATTATTCAACCTTTTTAC 757 Query 4036 ACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAG-ATCTTTTAATCGTA-TTTGTATT 4093 ||| ||||||||||||||||| ||||| |||||| | | |||| || | | |||||||| Sbjct 758 ACCCTTTAGTGCTGGTTTAGTTTATTTAATGTATCGCAGCTTTGAA--GAAGTTTGTATT 815 Query 4094 TTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTT 4137 || | |||| | || || |||| | ||||| ||| | || || Sbjct 816 TTTACACCAAACTCTTCTAGACCAGGAAATTCAGAACGTTACTT 859 >seq4532 Length=764 Score = 156 bits (172), Expect = 2e-33 Identities = 204/279 (73%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 3861 ATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTC 3920 ||||| | || ||||| ||||||||| ||||| |||| | || ||||| || || | | Sbjct 92 ATACCCATGGCAAAGGAGTACATTTTGTGATGTCTGATTGAGGTTTCTCAGTAGAACGAC 151 Query 3921 AAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCAT 3980 ||||||| | |||||||| | || ||| | ||||| | |||| ||||||||| |||| Sbjct 152 AAGAAAACGTACAAGAAATTCTTTCAAAACAACTGTATCTTTGTCGATGTTTAATAGCAT 211 Query 3981 TGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTACACCTT 4040 ||||| | | | ||||| ||| ||| | ||||| ||| | | |||||||| | Sbjct 212 TGATGGTTGAAAAAGAGGGTGGCGATTTTGTAACAAAATTATTCAACCTTTTTACACCCT 271 Query 4041 TTAGTGCTGGTTTAGTGTATTTGATGTATAG-ATCTTTTAATCGTA-TTTGTATTTTCAA 4098 |||||||||||||||| ||||| || ||| | | |||| || | | |||||||||| | Sbjct 272 TTAGTGCTGGTTTAGTTTATTTAATATATCGCAGCTTTGAA--GAAGTTTGTATTTTAAC 329 Query 4099 ACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTT 4137 |||| | || || |||| | ||||| ||| | || || Sbjct 330 ACCAAACTCTTCTAGACCAGGAAATTCAGAACGTTACTT 368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276534694882327