Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4 125 4e-24 seq13 123 1e-23 seq11 114 7e-21 seq1 107 1e-18 seq8 105 3e-18 >seq4 Length=14241696 Score = 125 bits (138), Expect = 4e-24 Identities = 82/91 (90%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 4748154 AAAAAAAAAAATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 4748095 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 ||||| |||||||||||||||||||||| || Sbjct 4748094 GCTCTAACCAACTGAGCTAATGGGCCGTTGA 4748064 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 4784448 AATAAAAAATTT--TTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 4784391 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 4784390 GACGCTCTAACCAACTGAGCTAATGGGCC 4784362 >seq13 Length=9884808 Score = 123 bits (136), Expect = 1e-23 Identities = 86/97 (89%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 11433 ATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 ||| |||| | ||||| | || ||||||||||| |||||||||| ||||||||||||| Sbjct 595196 ATAAAATTTAAAAAAAGT-AATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTT 595254 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||||||||||||||||||| Sbjct 595255 ATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 595291 >seq11 Length=17228712 Score = 114 bits (126), Expect = 7e-21 Identities = 90/106 (85%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| ||| |||| | ||||||| | ||||||||| |||||||||| ||||||||| Sbjct 14944008 AAAAATAAAATTGACAAAAAAT-ATTCTGGCCCATGGGGGGATCGAACCCACGACCTTCG 14944066 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 |||||||||||||||||||| |||| ||||||||||||||| |||| Sbjct 14944067 CGTTATTAGCACGACGCTCTAACCATCTGAGCTAATGGGCC-TCGA 14944111 >seq1 Length=17153651 Score = 107 bits (118), Expect = 1e-18 Identities = 78/90 (87%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| |||||| | ||||| ||||| |||||||||| |||||||||||||||||||| Sbjct 1479652 TAAGAAAAAAA-ATTTTGGCTCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 1479710 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||| ||| Sbjct 1479711 CGACGCTCTAACCAACTGAGCTAATGAGCC 1479740 >seq8 Length=9733834 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| ||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 9505805 TTGGCTCATGAGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 9505746 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||| ||| Sbjct 9505745 CTGAGCTAATGAGCC 9505731 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261473324543284