Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq41 125 6e-24 seq1 98.7 9e-16 seq14 95.1 1e-14 seq172 89.7 5e-13 >seq41 Length=919255 Score = 125 bits (138), Expect = 6e-24 Identities = 185/256 (72%), Gaps = 7/256 (3%) Strand=Plus/Plus Query 94756 TAACGGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAG-TGCAAAGTA 94813 ||| ||||||| |||| ||| || ||||||||||| || || | |||| || | ||| Sbjct 762510 TAAGGGTTTTTACAAAAATTTGCATTCCTCCTCTCAGACG-AAGAACAAGATGAAGAGTC 762568 Query 94814 GATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGG--AATCCTCCAGCTGTTTTCCGC 94871 ||||||||||| | ||||||| | | ||||| | ||| ||||| ||||| || Sbjct 762569 GATTCCTTTTGAATATTATAAT--CAGAGAGTGTACGTCCATCTTCCAGTTGTTTACCAG 762626 Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| || ||||| || |||||||| || ||||| ||||| | ||||||||| || | Sbjct 762627 CAAAGATCAACCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCTTGAATTTTTGCTTTCA 762686 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || | | ||| || | || || |||| || || ||||| || ||||| || | Sbjct 762687 CGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGAGTTATAGTTTTCCCTGTAAGGGTCT 762746 Query 94992 TCACAAAGATCTGCAT 95007 | || || || ||||| Sbjct 762747 TGACGAAAATTTGCAT 762762 Score = 109 bits (120), Expect = 5e-19 Identities = 155/215 (72%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCCTC 94857 |||| || | ||| ||||||||||| | ||||||||| | || || | || || Sbjct 762783 CAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAGAGCGTACGTCCG--TCTTC 762840 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || ||||| ||||||| || ||||| ||||| || ||||| ||||| ||||| | Sbjct 762841 AAGTTGCTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTGTCTTG 762900 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||||||| || ||| | | ||| || | || || |||| ||||| ||||| Sbjct 762901 AATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTT 762960 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTA 95012 ||| || || || || || |||||||||||| ||| Sbjct 762961 TCCTGTCAGTGTCTTGACGAAGATCTGCATGATTA 762995 Score = 104 bits (114), Expect = 2e-17 Identities = 151/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTC 94857 |||| ||||| || ||||||||||| | || ||||| | ||||| | ||| || Sbjct 762327 CAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAG--AAAGTGTGCGCCCATCTTC 762384 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||||| || | ||||| || || || || ||||||||||| ||||| ||||| | Sbjct 762385 CAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTG 762444 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||||||| || || | | ||| |||| || || |||| || || ||||| Sbjct 762445 AATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATTGTTTT 762504 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| ||||| ||||| ||||| || ||||| Sbjct 762505 TCCTGTAAGGGTTTTTACAAAAATTTGCAT 762534 >seq1 Length=17153651 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||| | | || |||||| || || ||||| || || || | ||||||||| Sbjct 7345294 CATTCCTCCGCGAAGTCTCAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATC 7345235 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| | ||| || || ||||| || ||||||| || | ||||| ||||| Sbjct 7345234 CGAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGG 7345175 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||||||||| |||||||| | || ||||| || || | | ||||||| || Sbjct 7345174 AGGAATACCCTCTTTGTCTTGGATCTTTGCTTTAACATTCTCTATTGTGTCAGAAGCTTC 7345115 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || |||| || || ||||| || || | ||||| || |||||||||||| Sbjct 7345114 AACTTCAAGAGTAATAGTTTTCCCTGTTAAGGTTTTAACGAAGATCTGCATG 7345063 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 |||||| | | || |||||| || || | || || || || || | ||||||||| Sbjct 7345519 TCCTCCACGAAGTCTCAACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGA 7345460 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 | ||| | ||| || || ||||| || ||||||| || | ||||| |||||||| Sbjct 7345459 AAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 7345400 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 |||||| ||||| |||| || || || || || | | ||||| | || || Sbjct 7345399 AATACCCTCTTTTTCATGGATCTTAGCTTTCACATTCTCTATTGTGTCGGGAACATCAAC 7345340 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || |||| ||| |||||||| ||||| ||| |||||||||| Sbjct 7345339 TTCCAAGGTAATGGCTTTACCAGTAAGCGTTTTAACAGAGATCTGCAT 7345292 >seq14 Length=11649563 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/130 (77%), Gaps = 4/130 (3%) Strand=Plus/Minus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||| ||||| || || | ||| || || || ||||||||||| || | |||||||| Sbjct 1883928 CTCCACCTCTTAAACGTAGCACTAAATGTAATGTAGATTCCTTCTGAATATTATAATC-- 1883871 Query 94839 TCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| ||| | |||||| | |||||||| |||||||||||||||| |||||||| Sbjct 1883870 TGATAAAGTTCTACCATCCTCTAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGG 1883811 Query 94897 AGGAATACCT 94906 ||||| ||| Sbjct 1883810 TGGAATTCCT 1883801 >seq172 Length=1724251 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/196 (70%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 94813 AGATTCCTTTT-GCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGC 94871 |||| |||||| | | |||||||| || ||| ||| |||| || ||||| Sbjct 1092416 AGATACCTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAG 1092357 Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || | | ||||||||| || ||||| ||||| ||||| | ||||| || || | Sbjct 1092356 CAAAAATAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTA 1092297 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | ||| || | || || |||| ||||||||||| ||||| | ||||| Sbjct 1092296 CATTTTCAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTT 1092237 Query 94992 TCACAAAGATCTGCAT 95007 ||||||| |||||||| Sbjct 1092236 TCACAAATATCTGCAT 1092221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448259769183240