Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 196 8e-46 >seq1 Length=17153651 Score = 196 bits (216), Expect = 8e-46 Identities = 204/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | | || |||||||||||||| |||||||||||||| ||| Sbjct 1101501 GCAAAGCGTCATAGAAAGGTTTTGCGTGATAACATCCAAGGTATCACCAAGCCAGCCATC 1101560 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||||||||| || || |||||| | ||||||||| | || ||||| | Sbjct 1101561 CGTCGTCTTGCTCGTCGTGGCGGTGTGAAGCGTATTTCTGGATTGATTTACGAAGAAACG 1101620 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||| | ||| | | | |||||||| || ||| | ||| || || Sbjct 1101621 CGTGGTGTATTGAAGGTGTTCTTGGAAAACGTTATCCGAGACGCTGTAACCTACACTGAA 1101680 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | || ||||| || | |||||| | ||||| || |||||||||||||| Sbjct 1101681 CACGCCAAGAGGAAAACTGTGACGGCTATGGATGTAGTCTACGCCTTGAAACGTCAAGGA 1101740 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | ||||||||||||| |||||| Sbjct 1101741 AGAACTCTTTATGGTTTTGGTGGTTAAT 1101768 Score = 183 bits (202), Expect = 5e-42 Identities = 205/273 (75%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | | || |||||||||||||| |||||||||||||| ||| Sbjct 1088511 GCAAAGCGTCATAGAAAGGTTTTGCGTGATAACATCCAAGGTATCACCAAGCCAGCCATC 1088452 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || |||||||| || || |||||| | ||||||||| | || ||||| | Sbjct 1088451 CGTCGTCTTGCCCGTCGTGGCGGTGTGAAGCGTATTTCTGGATTGATTTACGAAGAAACG 1088392 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||| | ||| | | | |||||||| || ||| | ||| || || Sbjct 1088391 CGTGGTGTATTGAAGGTGTTCTTGGAAAACGTTATCCGAGACGCTGTAACCTACACTGAA 1088332 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || || ||||| || | ||||| | ||||| || |||||||||||||| Sbjct 1088331 CACGCCAAGCGGAAAACTGTGACAGCTATGGACGTAGTCTACGCCTTGAAACGTCAAGGA 1088272 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 | | |||| || ||||| |||||| |||| Sbjct 1088271 AGAACTCTTTACGGGTTTGGTGGTTAAT-TTCT 1088240 Score = 167 bits (184), Expect = 4e-37 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | ||||| ||||||||||| || ||||| || ||||| || Sbjct 4836008 GCGAAGCGTCATAGGAAGGTACTTCGTGATAACATCCAGGGTATCACGAAACCAGCAATT 4835949 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||||||||||||||| || || || | ||||| ||| | || || || | | Sbjct 4835948 CGTCGCTTGGCTCGTCGTGGTGGTGTTAAACGCATATCTGGCTTGATTTACGAGGAAACT 4835889 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| || || | || || | | |||||| | |||||| | || ||||| Sbjct 4835888 CGTGGTGTCTTAAAAGTTTTTCTAGAAAACGTTATTCGTGATGCGGTTACGTACACCGAA 4835829 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||||||| |||||||| || | |||||| | || || || ||||| | ||||| Sbjct 4835828 CACGCTAAACGGAAGACTGTGACGGCTATGGATGTTGTATACGCTTTGAAGAGACAAGGA 4835769 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | |||||||||||||| ||||| Sbjct 4835768 CGCACTCTTTATGGTTTTGGAGGTTAA 4835742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070071652037