Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq15 89.7 5e-13 >seq15 Length=11467329 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 |||||| ||||||| | || ||| | || |||| | | ||| | |||| ||| Sbjct 5183307 TTAAAATTCAGCATTAACTGTAAAATTGCTTTCGACTTTATCTTGCATTACTCCCCATTT 5183248 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 |||||| || | ||| | ||||||||||| || ||||| ||||| || || || || Sbjct 5183247 TTGATACTCTCCTACTTTCTTTTCGAAAAAGTTCGTCTTACCTTCTAAAGAGATGTGCTC 5183188 Query 21247 CATAAAATCAAATGGATTTTCAGA 21270 ||||||||||||||||||||| || Sbjct 5183187 CATAAAATCAAATGGATTTTCGGA 5183164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531863507105160