Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 145 1e-29 seq15 100 4e-16 >seq6 Length=12724418 Score = 145 bits (160), Expect = 1e-29 Identities = 219/307 (71%), Gaps = 6/307 (2%) Strand=Plus/Minus Query 63289 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63348 |||||||||||||||| | || | | ||||| | |||||| ||||| || ||||| | Sbjct 10924958 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 10924899 Query 63349 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63408 | | |||| || | ||| |||||||| ||||| | |||| ||| || ||||| || | Sbjct 10924898 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 10924839 Query 63409 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG--CTTCC 63466 |||| | ||||||||| | ||| || |||| |||| ||||| || ||| | | || Sbjct 10924838 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACC--AGCTATTGGTGTGCC 10924781 Query 63467 ACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 || || |||||| | || | | || || || || || || ||| || | || Sbjct 10924780 TCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTAATAAGTG 10924722 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 | |||| |||||| || ||||| || || |||||||||||||| |||| | |||| || Sbjct 10924721 CACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAAA 10924662 Query 63586 AACAGCT 63592 |||| || Sbjct 10924661 AACAACT 10924655 Score = 145 bits (160), Expect = 1e-29 Identities = 194/268 (72%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 62250 GATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62309 || ||| || ||| ||||| ||| || || | |||| ||| | | ||| || || Sbjct 10926378 GAACCATTATTTGCTATAATTTCATTTTTCATATTCTCATCCCAAAGATCTCTTTCAGTC 10926319 Query 62310 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 62369 | | ||| | | ||| ||||| || |||||||| ||||||||||| ||||| | | Sbjct 10926318 AGATCTCGTAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCA 10926259 Query 62370 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62429 ||||||||||||||||| ||||| | || ||||||||||| || ||||| ||||| || Sbjct 10926258 TAAATATTACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGAC 10926199 Query 62430 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTAT 62487 || || |||||||| || | |||||| ||| |||| || ||||| | ||||| | Sbjct 10926198 GCCGTTGGCATAGGGGCGATTAATAAAGAATTCCTAACTCC--ATGTTTAGCAATTTTTT 10926141 Query 62488 CTTTTAGAGGTTCCCAATTCCAAAGATC 62515 |||| ||| | ||| ||||| | ||| Sbjct 10926140 CTTTCAGAATTGTCCAGTTCCATAAATC 10926113 Score = 114 bits (126), Expect = 2e-20 Identities = 236/347 (68%), Gaps = 12/347 (3%) Strand=Plus/Minus Query 62736 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 62795 ||||| ||||| |||||| | ||| || ||| ||||| |||| ||||||||||| Sbjct 10925705 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCAGGAACTGGATAATAATTC 10925646 Query 62796 ATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTG 62852 | ||| |||||||| | | ||| | | |||||| |||| || | |||||| Sbjct 10925645 ACATCGATAATTTTGTCTAAATTACAAGTAACAATT--TTTGTT-ACTTTTCGCAGTTTT 10925589 Query 62853 AGAAAATCAAATCGCCCAT--CTA----TTACAAACATGTTCAAGGCAACAGATGCCAGA 62906 |||||||||| | || || |||||||||| |||| || | || || | | Sbjct 10925588 TCAAAATCAAATGTCTGATTACTGGAGTTTACAAACATATTCACTGCGATTGAAGCTAAA 10925529 Query 62907 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 62966 || || || || | |||| | | | |||||||| || || || || | |||||| Sbjct 10925528 TTGCATACAGCAATTTCATCTGGACTGGAATATTGTACGATTTCTGTACATAAATTACTG 10925469 Query 62967 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 63026 | ||||| || ||||||||||| ||||| || ||||| ||| |||||||| Sbjct 10925468 CTTTTGATCGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTATAAAGC 10925409 Query 63027 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63073 ||| | ||||| || ||||||| ||||| | ||| ||| |||| Sbjct 10925408 ATGTAAGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCA 10925362 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/165 (75%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || || || || |||||||||| | |||||| |||||| |||||||| || ||| Sbjct 10925204 TCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGAC 10925145 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63256 || | || | |||| |||||||||||||| |||||||| ||||| | ||| ||| || Sbjct 10925144 CATACACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAAAGC-ATAGAA 10925086 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT--ATTCTTTTTA 63299 || ||||| | ||||| ||| || || ||||| ||| || ||| Sbjct 10925085 TAATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 10925041 Score = 93.3 bits (102), Expect = 5e-14 Identities = 172/252 (68%), Gaps = 8/252 (3%) Strand=Plus/Minus Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 ||||||||||| || | ||||| | ||| ||| | | ||||| || || ||||| Sbjct 10924583 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 10924524 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATG 63706 | ||| || | | |||||| || || |||||| || ||||| |||| |||| Sbjct 10924523 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGGATG 10924464 Query 63707 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63766 | ||||| || | |||||||||||| || ||||||||||| | || | ||| Sbjct 10924463 G----CAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACTACTTTCCCTTGTAT 10924408 Query 63767 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63826 ||| || || || | |||| | || || |||||||| || || || |||||||| Sbjct 10924407 TTTTAATAAATAACTTCTTTCAAGTGTCTTGAAACCAAAGTAATTATAACTAAAGTCTCT 10924348 Query 63827 TTCGTAAATAAT 63838 || ||||| || Sbjct 10924347 ATCATAAATTAT 10924336 Score = 86.0 bits (94), Expect = 8e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 62571 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62630 ||| |||| || || |||| |||| || |||| |||||||| || |||||||||||| Sbjct 10925956 CCTTCATAGGTTTCATATGTACCTTTCTCTGCAGCAAGTTCACAGCTAGCCTCTAATGCA 10925897 Query 62631 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 62690 || ||||| | || || || || | |||| || | |||||||||| || |||||| Sbjct 10925896 CCATAATATAGTGTCTCAAATATTTGGATATTAAGTTTTTGTGCTTCCTCACTTTCAAAT 10925837 Query 62691 GGATA 62695 ||||| Sbjct 10925836 GGATA 10925832 >seq15 Length=11467329 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGT 33847 ||||||| | ||| ||||| || || |||||||||||||| || || ||||||||||| | Sbjct 5182034 CTTTAGAAAGATCCACTTCCTCGACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 5181975 Query 33848 TCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 ||| |||||| ||||||| || || | |||||||||| ||||||| Sbjct 5181974 GCCAAATGTCAGGCCATTGGATAGGAAAGACAACAAATCTACGTGGATTT 5181925 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 33100 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATAT 33159 ||| ||| |||| | | || ||||| | || |||||||| || || ||||| |||||| Sbjct 5183082 TTACAAACCTTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATAT 5183023 Query 33160 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAAT 33219 ||| | | ||| ||||||||||| | || ||| || | ||| | || | |||| Sbjct 5183022 TGACACATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCGTCCGTTAAAAAT 5182963 Query 33220 TCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGA 33279 ||||||||||| || |||||| | ||||| || | || || | |||| Sbjct 5182962 TCTTGTTCAATTTTGACAGCATCTTTAATAATTGACGTGACCCGATCGCAAGACGGTTTT 5182903 Query 33280 TGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33328 || | | |||||| ||||| |||||||||||||| || || | |||| Sbjct 5182902 TGTACAATATGTTTGAACATTAAACATGCGAAATCACAATGTAATCCCT 5182854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622903523614440