Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq382 102 2e-16 >seq382 Length=5783 Score = 102 bits (112), Expect = 2e-16 Identities = 166/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 || ||| | || || ||||||||| || ||||| ||| | || || || | | ||| Sbjct 868 TTCCCATTGCTAACTACAAAGCGAGTATTTTGGAGGGGCGTAGTGGAGGAGTTGTTATGG 927 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAA-ATGTAAAAATTTGGGA 111433 |||||| | ||| |||||||| || ||| || ||||| |||| | || ||||| Sbjct 928 TTTATTAGAGGATCGACAAATGCCAAAGAA-TTAAGTCAAAAGGATGTCCACATATGGGA 986 Query 111434 TGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAA-GAAGGTG 111492 || ||| | |||||||| || ||||| || ||| ||| | | | || ||||| | Sbjct 987 TGCAAACAGTTCACGTGAGTTCCTAGACTCTTGTGG-CTTCACAAATAGAAAAGAAGGAG 1045 Query 111493 ATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAA 111546 || | ||||| ||||| |||||||||||| | || | ||||||| | ||| ||| Sbjct 1046 ATTTAGGACCTGTTTATGGATTTCAATGGAGACATTATGGTGCAAAGTACCAAA 1099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303259934086238