Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1 122 7e-23 seq41 91.5 1e-13 seq6 87.8 2e-12 >seq1 Length=17153651 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || ||||| ||||| || ||| | ||||| | ||||| || || Sbjct 7345060 CAACATGCAGATCTTCGTTAAAACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAGC 7345119 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||||| || ||| | || ||| |||||| |||||||| || || ||||| || Sbjct 7345120 TTCTGACACAATAGAGAATGTTAAAGCAAAGATCCAAGACAAAGAGGGTATTCCTCCAGA 7345179 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | |||| | | ||||| ||||| ||||||| |||| | ||||| Sbjct 7345180 CCAGCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCGGATTA 7345239 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||| || ||||| ||||||| ||||||||||| ||| | | |||||| Sbjct 7345240 TAACATCCAGAAAGAGTCTACAAGCCATTTAGTGTTGAGACTTCGCGGAGGA 7345291 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | | ||| ||||| | ||||| ||| | |||||| | ||||| || | Sbjct 7345291 AATGCAGATCTCTGTTAAAACGCTTACTGGTAAAGCCATTACCTTGGAAGTTGATGTTCC 7345350 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| || ||| | || ||| ||||| || ||||| || || ||||| || || Sbjct 7345351 CGACACAATAGAGAATGTGAAAGCTAAGATCCATGAAAAAGAGGGTATTCCTCCAGACCA 7345410 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | | ||||| ||||| ||||||| |||| | |||||||| Sbjct 7345411 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7345470 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || ||||| || ||| | ||||||||||| ||| | | |||||| Sbjct 7345471 CATCCAGAAAGAGTCCACACTCCATTTAGTGTTGAGACTTCGTGGAGGA 7345519 >seq41 Length=919255 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || ||| | || || | ||||| || || | Sbjct 762762 ATGCAAATTTTCGTCAAGACCCTTACAGGGAAAACTATAACTCTTGAAGTTGAAGCTTCC 762703 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || ||| ||| ||| ||||| ||||| || ||||| || ||| Sbjct 762702 GATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCAA 762643 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGTCAGCGATTATAA 24169 || || |||| | | || || ||||| ||||||| || | || || |||||||| Sbjct 762642 CAAAGGTTGATCTTTGCTGGTAAACAACTGGAAGATGGACGTACAC-TCTCTGATTATAA 762584 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||| ||||| || ||||| | || | | ||||||||||| Sbjct 762583 TATTCAAAAGGAATCGACTCTTCATCTTGTTCTTCGTCTGAGAGGAGGA 762535 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||||||||| | || |||||| | || || | ||||| || || Sbjct 762535 AATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACAATAACTCTTGAAGTTGAAGCTTC 762476 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || ||| | || ||| ||| ||| ||||| ||||| || ||||| || || Sbjct 762475 TGATACTATTGAGAATGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCA 762416 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||||| |||| | || || || ||| | ||||||| | | | ||||| || Sbjct 762415 ACAGAGGTTGATCTTCGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTACAA 762356 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| ||||| || | ||| | ||| Sbjct 762355 TATACAAAAGGAATCAACCTTGCATCTTGTG 762325 >seq6 Length=12724418 Score = 87.8 bits (96), Expect = 2e-12 Identities = 216/325 (66%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 132614 ATACCGATGGGTCTATGTTTAAAATTCGATACTTGTGCGCTAGTCAGCGGATAAAAGTTT 132673 ||||| || || |||||||||||||| ||| || ||| || | |||||| | || Sbjct 10925705 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCAGGAACTGGATAATAATTC 10925646 Query 132674 TTGTCTATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCACTTTATATAGCGATTCA 132733 || || ||||| | | ||| ||| |||| | | | ||||| || |||| Sbjct 10925645 ACATCGATAATTTTGTCTAAATTACAAGTAACAATTTTTGTTACTTTTCGCAGTTTTTCA 10925586 Query 132734 AAGTCAAAGTTTTTAGTCCTTTTGTTGGCAAAACAATTGACGGCAATCGAGGCCAAATTG 132793 || ||||| | | | | || ||| |||| ||| || || || || || |||||| Sbjct 10925585 AAATCAAATGTCTGATTACTGGAGTTTACAAACATATTCACTGCGATTGAAGCTAAATTG 10925526 Query 132794 CATACGGCTGTCTCTTTATTATCGCTATACTGTACGATTTCTGCACACAAATTACTGTTT 132853 ||||| || | || | | | ||| ||||||||||||| ||| ||||||||| || Sbjct 10925525 CATACAGCAATTTCATCTGGACTGGAATATTGTACGATTTCTGTACATAAATTACTGCTT 10925466 Query 132854 CGAATAACTCCCAAGtttttttGATTGTTTTTCTCGTTTAC-GTTATCTTTATGCAACAT 132912 || || || |||| ||||| | || || |||| | |||||||| | ||| Sbjct 10925465 TTGATCGTCCCTAAATTTTGATGATT-TGATTTACGATTACAATGATCTTTATAAAGCAT 10925407 Query 132913 GTACGGACCTCCGGTTTCGACCTGA 132937 ||| ||| ||| ||||| || ||| Sbjct 10925406 GTAAGGAGTTCCTGTTTCAACTTGA 10925382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429906609709395