Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 seq41 93.3 4e-14 >seq1 Length=17153651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | | || ||||||||| | || ||||| || || ||||| ||||| Sbjct 7345290 CCTCCGCGAAGTCTCAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCGAA 7345231 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | || ||||| || ||||| || |||| |||||||||||||| ||||| Sbjct 7345230 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7345171 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || || |||||||| ||| || ||||| | | | ||| | || || | | || | Sbjct 7345170 ATACCCTCTTTGTCTTGGATCTT-TGCTTTAACATTCTCTATTGTGTCAGAAGCTTCAAC 7345112 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| ||||| || |||| ||||| ||||| ||||||||| Sbjct 7345111 TTCAAGAGTAATAGTTTTCCCTGTTAAGGTTTTAACGAAGATCTGCATG 7345063 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 || ||||||||| | || ||||| || || ||||| ||||| | || | || Sbjct 7345504 CAACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATC 7345445 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||||| || ||||| || |||| |||||||||||||| ||||| || || ||||| || Sbjct 7345444 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTTTC 7345385 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC-TCGATGTCGACGGTAACGG 131200 ||| || || | | ||| | || |||| | || || | || | ||||| || Sbjct 7345384 ATGGATCTTAGCTTTCACATTCTCTATTGTGTCGG-GAACATCAACTTCCAAGGTAATGG 7345326 Query 131201 TTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||||| || || ||||| || | |||||||| Sbjct 7345325 CTTTACCAGTAAGCGTTTTAACAGAGATCTGCAT 7345292 >seq41 Length=919255 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/235 (70%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | ||||| ||||||||||| || |||||| Sbjct 762764 CCACCACGAAGGCGAAGGACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAG 762823 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || || ||||| || || |||| || | || || ||||| || Sbjct 762824 AGCGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGA 762883 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| ||||| ||| ||| ||| || | | ||| | |||||||| | || | Sbjct 762884 ATTCCTTCCTTGTC-TTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAAC 762942 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTAT 131241 || | || | ||||| || || || || || ||||| |||||||||| |||| Sbjct 762943 TTCAAGTGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCATGA-TTAT 762996 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| || || | ||| | ||||| ||||||||||| || ||||| Sbjct 762536 CCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCAGAG 762595 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || || || || |||| || | || ||||| |||||| Sbjct 762596 AGTGTACGTCCATCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGAGGG 762655 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| ||||| ||| ||| ||| || | | ||| | |||||||| | || | Sbjct 762656 ATTCCTTCCTTGTC-TTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAAC 762714 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| || || || || || |||||||| ||||| Sbjct 762715 TTCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471979706002560