Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03]
5,609 sequences; 248,654,244 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq41 127 1e-24
seq2653 125 5e-24
seq172 123 2e-23
seq1 87.8 1e-12
>seq41
Length=919255
Score = 127 bits (140), Expect = 1e-24
Identities = 168/232 (72%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| || ||||||| ||| | || | ||||||||| |||||||||||||| ||||
Sbjct 762532 CATT-CCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAAT 762590
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
|||| | |||| | || || | |||||| || ||||| || | | |||||| || |
Sbjct 762591 CAGAGAGTGTACGTCCATCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTG 762650
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|||| ||||| ||||| ||||||| ||||| |||| | |||||| | ||
Sbjct 762651 GAGGGATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTT 762710
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||||| | || |||||||| || || | ||| || ||||| || |||||
Sbjct 762711 CAACTTCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762
Score = 127 bits (140), Expect = 1e-24
Identities = 153/208 (74%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173
||||||||| |||||||||||||| ||||| || | |||| |||| || | |||
Sbjct 762787 ATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAGAGCGTACGTCCGTCTTCAAGTTG 762846
Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233
||||| ||||| || | | ||||||||| | || | ||||| ||||| ||||||
Sbjct 762847 CTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTGTCTTGAATTTT 762906
Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293
| ||||| |||| | |||||| | ||||||||| | ||| |||||||| || ||
Sbjct 762907 TGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGT 762966
Query 38294 CAAGGTTTTCACGAATATCTGCATGTTT 38321
|| || || ||||| ||||||||| ||
Sbjct 762967 CAGTGTCTTGACGAAGATCTGCATGATT 762994
Score = 98.7 bits (108), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
||||||| | ||| | ||| | ||| ||| || | |||||||| ||||||||||||||
Sbjct 762308 CCACCTCGAAGACGAAGCACAAGATGCAAGGTTGAT-TCCTTTTGTATATTGTAATCAGA 762366
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| || | || || |||||||| || || || || | | ||||| || | ||
Sbjct 762367 AAGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGG 762426
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||||| ||||| ||||||| |||||||||| | |||||| | ||||||
Sbjct 762427 AATTCCTTCCTTGTCTTGAATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAAC 762486
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||| | || || ||||| || || | |||||| || || || |||||
Sbjct 762487 TTCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCAT 762534
>seq2653
Length=1179
Score = 125 bits (138), Expect = 5e-24
Identities = 74/77 (96%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 499
Query 20007 GGTAATATTTAGCCTTA 20023
||| ||||||||||||
Sbjct 498 GGTTGTATTTAGCCTTA 482
>seq172
Length=1724251
Score = 123 bits (136), Expect = 2e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 38130 TTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATT 38189
||||||||||| ||||| |||| | |||| | || || ||||| ||||| ||||| ||
Sbjct 1092408 TTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAATA 1092349
Query 38190 AGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGG 38249
|| ||||| ||||| | || | ||||| |||||| ||||| || ||||| |
Sbjct 1092348 AGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTTCA 1092289
Query 38250 ACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAAT 38309
| ||||||| ||| ||||| | || || |||||||| ||||| |||||||| |||
Sbjct 1092288 ATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAAAT 1092229
Query 38310 ATCTGCATGTT 38320
|||||||| ||
Sbjct 1092228 ATCTGCATCTT 1092218
>seq1
Length=17153651
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| ||||| || ||| || || || || ||||| || | | | | | ||
Sbjct 7345276 CAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCGAAAGAGTTCTTCCATC 7345217
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|||| |||||| || ||||| || | || || || || | || | || ||||||||
Sbjct 7345216 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7345157
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
|| ||| || ||||||| | || || | ||||||||| | ||||||||
Sbjct 7345156 TTGGATCTTTGCTTTAACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGT 7345097
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
||| || || |||||||| ||||| |||||||||||
Sbjct 7345096 TTTCCCTGTTAAGGTTTTAACGAAGATCTGCATGTT 7345061
Score = 82.4 bits (90), Expect = 5e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 74052 GCTGAGGCGGGATTTTATTATACGAATAAAGGCGACAGAACAAAGTGCTACTATTGTGAC 74111
|| || || || |||| |||||| ||||| ||| ||| ||| ||| | ||||
Sbjct 4481418 GCCGATGCAGGCTTTTTTTATACTGGGAAAGGTGACCAAACCCTGTGTTACCACTGTGGA 4481477
Query 74112 AATGGTTTAAAAGATTGGGAACCCGAAGATGTGCCCTGGGAACAACACGCTCGTTGGTTT 74171
||||||||||||||||||||| ||||||| || |||||||||||||| ||||||
Sbjct 4481478 GGTGGTTTAAAAGATTGGGAACCAGAAGATGATCCTTGGGAACAACACGCAAAGTGGTTT 4481537
Query 74172 GACAAATG 74179
|||||
Sbjct 4481538 TCTAAATG 4481545
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334924303114079
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |