Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq41 127 1e-24 seq2653 125 5e-24 seq172 123 2e-23 seq1 87.8 1e-12 >seq41 Length=919255 Score = 127 bits (140), Expect = 1e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||||| ||| | || | ||||||||| |||||||||||||| |||| Sbjct 762532 CATT-CCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAAT 762590 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | |||| | || || | |||||| || ||||| || | | |||||| || | Sbjct 762591 CAGAGAGTGTACGTCCATCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTG 762650 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| ||||||| ||||| |||| | |||||| | || Sbjct 762651 GAGGGATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTT 762710 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| | || |||||||| || || | ||| || ||||| || ||||| Sbjct 762711 CAACTTCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 Score = 127 bits (140), Expect = 1e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||||||||| |||||||||||||| ||||| || | |||| |||| || | ||| Sbjct 762787 ATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAGAGCGTACGTCCGTCTTCAAGTTG 762846 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||||| ||||| || | | ||||||||| | || | ||||| ||||| |||||| Sbjct 762847 CTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTGTCTTGAATTTT 762906 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 | ||||| |||| | |||||| | ||||||||| | ||| |||||||| || || Sbjct 762907 TGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGT 762966 Query 38294 CAAGGTTTTCACGAATATCTGCATGTTT 38321 || || || ||||| ||||||||| || Sbjct 762967 CAGTGTCTTGACGAAGATCTGCATGATT 762994 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||||||| | ||| | ||| | ||| ||| || | |||||||| |||||||||||||| Sbjct 762308 CCACCTCGAAGACGAAGCACAAGATGCAAGGTTGAT-TCCTTTTGTATATTGTAATCAGA 762366 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | || | || || |||||||| || || || || | | ||||| || | || Sbjct 762367 AAGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGG 762426 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| ||||| ||||||| |||||||||| | |||||| | |||||| Sbjct 762427 AATTCCTTCCTTGTCTTGAATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAAC 762486 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| | || || ||||| || || | |||||| || || || ||||| Sbjct 762487 TTCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCAT 762534 >seq2653 Length=1179 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 558 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 499 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 498 GGTTGTATTTAGCCTTA 482 >seq172 Length=1724251 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38130 TTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATT 38189 ||||||||||| ||||| |||| | |||| | || || ||||| ||||| ||||| || Sbjct 1092408 TTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAATA 1092349 Query 38190 AGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGG 38249 || ||||| ||||| | || | ||||| |||||| ||||| || ||||| | Sbjct 1092348 AGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTTCA 1092289 Query 38250 ACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAAT 38309 | ||||||| ||| ||||| | || || |||||||| ||||| |||||||| ||| Sbjct 1092288 ATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAAAT 1092229 Query 38310 ATCTGCATGTT 38320 |||||||| || Sbjct 1092228 ATCTGCATCTT 1092218 >seq1 Length=17153651 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| ||||| || ||| || || || || ||||| || | | | | | || Sbjct 7345276 CAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCGAAAGAGTTCTTCCATC 7345217 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 |||| |||||| || ||||| || | || || || || | || | || |||||||| Sbjct 7345216 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7345157 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 || ||| || ||||||| | || || | ||||||||| | |||||||| Sbjct 7345156 TTGGATCTTTGCTTTAACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGT 7345097 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| || || |||||||| ||||| ||||||||||| Sbjct 7345096 TTTCCCTGTTAAGGTTTTAACGAAGATCTGCATGTT 7345061 Score = 82.4 bits (90), Expect = 5e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 74052 GCTGAGGCGGGATTTTATTATACGAATAAAGGCGACAGAACAAAGTGCTACTATTGTGAC 74111 || || || || |||| |||||| ||||| ||| ||| ||| ||| | |||| Sbjct 4481418 GCCGATGCAGGCTTTTTTTATACTGGGAAAGGTGACCAAACCCTGTGTTACCACTGTGGA 4481477 Query 74112 AATGGTTTAAAAGATTGGGAACCCGAAGATGTGCCCTGGGAACAACACGCTCGTTGGTTT 74171 ||||||||||||||||||||| ||||||| || |||||||||||||| |||||| Sbjct 4481478 GGTGGTTTAAAAGATTGGGAACCAGAAGATGATCCTTGGGAACAACACGCAAAGTGGTTT 4481537 Query 74172 GACAAATG 74179 ||||| Sbjct 4481538 TCTAAATG 4481545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334924303114079