Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6 149 8e-31 seq15 120 4e-22 >seq6 Length=12724418 Score = 149 bits (164), Expect = 8e-31 Identities = 195/268 (73%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 62105 GATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62164 || ||| || ||| ||||| ||| || || | |||| ||| | | ||| || || Sbjct 10926378 GAACCATTATTTGCTATAATTTCATTTTTCATATTCTCATCCCAAAGATCTCTTTCAGTC 10926319 Query 62165 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 62224 | | ||| | | ||| ||||| || |||||||| ||||||||||| ||||| | | Sbjct 10926318 AGATCTCGTAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCA 10926259 Query 62225 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62284 ||||||||||||||||| ||||| | ||| ||||||||||| || ||||| ||||| || Sbjct 10926258 TAAATATTACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGAC 10926199 Query 62285 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTAT 62342 || || |||||||| || | |||||| ||| |||| || ||||| | ||||| | Sbjct 10926198 GCCGTTGGCATAGGGGCGATTAATAAAGAATTCCTAACTCC--ATGTTTAGCAATTTTTT 10926141 Query 62343 CTTTTAGAGGTTCCCAATTCCAAAGATC 62370 |||| ||| | ||| ||||| | ||| Sbjct 10926140 CTTTCAGAATTGTCCAGTTCCATAAATC 10926113 Score = 140 bits (154), Expect = 4e-28 Identities = 218/307 (71%), Gaps = 6/307 (2%) Strand=Plus/Minus Query 63144 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63203 |||||||||||||||| | || | | ||||| | |||||| ||||| || ||||| | Sbjct 10924958 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 10924899 Query 63204 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63263 | | |||| || | ||| |||||||| ||||| | |||| ||| || ||||| || | Sbjct 10924898 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 10924839 Query 63264 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAG--CTTCC 63321 |||| | ||||||||| | |||||| ||| |||| || || || ||| | | || Sbjct 10924838 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACC--AGCTATTGGTGTGCC 10924781 Query 63322 ACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63380 || || |||||| | || | | || || || || || || ||| || | || Sbjct 10924780 TCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTAATAAGTG 10924722 Query 63381 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 63440 | |||| |||||| |||||||| || || ||||| |||||||| |||| | |||| || Sbjct 10924721 CACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAAA 10924662 Query 63441 AACAGCT 63447 |||| || Sbjct 10924661 AACAACT 10924655 Score = 118 bits (130), Expect = 1e-21 Identities = 237/347 (68%), Gaps = 12/347 (3%) Strand=Plus/Minus Query 62591 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 62650 ||||| ||||| |||||| | ||| || ||| ||||| |||| ||||||||||| Sbjct 10925705 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCAGGAACTGGATAATAATTC 10925646 Query 62651 ATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTG 62707 | ||| |||||||| | | ||| | | |||||| |||| || | |||||| Sbjct 10925645 ACATCGATAATTTTGTCTAAATTACAAGTAACAATT--TTTGTT-ACTTTTCGCAGTTTT 10925589 Query 62708 AGAAAATCAAATCGCCCAT--CTA----TTACAAACATGTTCAATGCAACAGATGCCAGA 62761 |||||||||| | || || |||||||||| |||| ||| | || || | | Sbjct 10925588 TCAAAATCAAATGTCTGATTACTGGAGTTTACAAACATATTCACTGCGATTGAAGCTAAA 10925529 Query 62762 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 62821 || || || || | |||| | | | |||||||| || || || || | |||||| Sbjct 10925528 TTGCATACAGCAATTTCATCTGGACTGGAATATTGTACGATTTCTGTACATAAATTACTG 10925469 Query 62822 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 62881 | ||||| || ||||||||||| ||||| || ||||| ||| |||||||| Sbjct 10925468 CTTTTGATCGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTATAAAGC 10925409 Query 62882 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 62928 ||| | ||||| || ||||||| ||||| | ||| ||| |||| Sbjct 10925408 ATGTAAGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCA 10925362 Score = 104 bits (114), Expect = 3e-17 Identities = 124/165 (75%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 || || || || |||||||||| || |||||| |||||| |||||||| || ||| Sbjct 10925204 TCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGAC 10925145 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63111 || | || | |||| |||||||||||||| |||||||| ||||| | ||| ||| || Sbjct 10925144 CATACACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAAAGC-ATAGAA 10925086 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT--ATTCTTTTTA 63154 || ||||| | ||||| ||| || || ||||| ||| || ||| Sbjct 10925085 TAATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 10925041 Score = 93.3 bits (102), Expect = 5e-14 Identities = 172/252 (68%), Gaps = 8/252 (3%) Strand=Plus/Minus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||||||||| || | ||||| | ||| ||| | | ||||| || || ||||| Sbjct 10924583 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 10924524 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATG 63561 | ||| || | | |||||| || || |||||| || ||||| |||| |||| Sbjct 10924523 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGGATG 10924464 Query 63562 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63621 | ||||| || | |||||||||||| || ||||||||||| | || | ||| Sbjct 10924463 G----CAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACTACTTTCCCTTGTAT 10924408 Query 63622 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63681 ||| || || || | |||| | || || |||||||| || || || |||||||| Sbjct 10924407 TTTTAATAAATAACTTCTTTCAAGTGTCTTGAAACCAAAGTAATTATAACTAAAGTCTCT 10924348 Query 63682 TTCGTAAATAAT 63693 || ||||| || Sbjct 10924347 ATCATAAATTAT 10924336 Score = 82.4 bits (90), Expect = 1e-10 Identities = 123/174 (71%), Gaps = 8/174 (5%) Strand=Plus/Minus Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485 ||| |||| || || |||| |||| || |||| |||||||| || |||||||||||| Sbjct 10925956 CCTTCATAGGTTTCATATGTACCTTTCTCTGCAGCAAGTTCACAGCTAGCCTCTAATGCA 10925897 Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545 || ||||| | || || || || | |||| || | ||| |||||| || |||||| Sbjct 10925896 CCATAATATAGTGTCTCAAATATTTGGATATTAAGTTTTTGTGCTTCCTCACTTTCAAAT 10925837 Query 62546 GGATA----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595 ||||| ||| || |||| || ||||| | || |||| ||||| || Sbjct 10925836 GGATATCGCATTAAAAGGAAT----GCATCTGCAAGACCCTGAATTCCAATCCC 10925787 >seq15 Length=11467329 Score = 120 bits (132), Expect = 4e-22 Identities = 171/240 (71%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 32920 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 32979 ||||| | | ||||||||||||||| | | |||||||| || || | ||||| |||| Sbjct 5182329 TATCTGTGATATATGTATCAATCAACATAGAGTACATTTCTGAGTGCACATTTTCTATGG 5182270 Query 32980 CCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 33039 | | |||||| || ||||| || | |||||||| | ||||||||| || |||||||| Sbjct 5182269 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCTTGACTAAATCGTT 5182210 Query 33040 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33099 | | | || ||||| || ||||| ||| || ||||| || || || ||||| || Sbjct 5182209 CGACGAGGTTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATA 5182150 Query 33100 TAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC---TTTAGATATAT 33156 | |||| ||| || || ||| | |||||| ||| ||||| | |||||||| Sbjct 5182149 TGAAATGTTTCTCATCACTATTTAAATGATTCCAGTCAAATATATCCTGTGAAGATATAT 5182090 Score = 113 bits (124), Expect = 6e-20 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 ||||||| | ||||||||| || || |||||||||||||| || || ||||||||||| | Sbjct 5182034 CTTTAGAAAGATCCACTTCCTCGACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 5181975 Query 33205 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 33264 ||| |||||| | |||| || ||||| | |||||||||| |||||||| | || | Sbjct 5181974 GCCAAATGTCAGGCCATTGGATAGGAAAGACAACAAATCTACGTGGATTTTCTTTCAGTA 5181915 Query 33265 TTGGTTC 33271 |||||| Sbjct 5181914 ATGGTTC 5181908 Score = 105 bits (116), Expect = 8e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 32457 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATAT 32516 ||| ||| |||| | | || ||||| | || |||||||| || |||||||| |||||| Sbjct 5183082 TTACAAACCTTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATAT 5183023 Query 32517 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 32576 ||| | | ||| ||||||||||| | || ||| || | ||| | || | |||| Sbjct 5183022 TGACACATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCGTCCGTTAAAAAT 5182963 Query 32577 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG--TG 32634 ||||||||||| ||| || ||| | ||||| || | || || | ||| | Sbjct 5182962 TCTTGTTCAATTTTGACAGCATCTTTAATAATTGACGTGACCCGATCGCAAGACGGTTTT 5182903 Query 32635 GATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 32685 |||||| |||||| ||||| |||||||||||||| || |||| |||| Sbjct 5182902 TGTACAAT--ATGTTTGAACATTAAACATGCGAAATCACAATGTAATCCCT 5182854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633587574476400