Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq172 132 4e-26 seq41 131 1e-25 seq14 95.1 1e-14 >seq172 Length=1724251 Score = 132 bits (146), Expect = 4e-26 Identities = 147/193 (76%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || |||||||| |||||| ||||||| | ||||| || | || Sbjct 1092221 ATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCATCA 1092280 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| || ||||| ||||| ||||||||||| Sbjct 1092281 GATACTATTGAA--AATGTAAAAGCTAAAATCCAG-GACAAGGAAGGAATTCCACCTGAT 1092337 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || |||||||||| || || ||||| ||||||| || ||| || ||||| Sbjct 1092338 CAGCAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTAT 1092397 Query 25176 AATATTCAAAAAG 25188 ||||||||||||| Sbjct 1092398 AATATTCAAAAAG 1092410 >seq41 Length=919255 Score = 131 bits (144), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| || | || || ||| | || || | ||||| || | || Sbjct 762535 AATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACAATAACTCTTGAAGTTGAAGCTTC 762476 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| ||||| ||| |||| ||||||| ||| ||||| ||||| ||||| || |||| Sbjct 762475 TGATACTATTGAGAATGTGAAAGCAAAAATTCAA-GACAAGGAAGGAATTCCTCCAGACC 762417 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| || | || || || || |||||||| ||||||| ||||| | ||||||| Sbjct 762416 AACAGAGGTTGATCTTCGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTACA 762357 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| ||||| ||||| || | ||| | ||||| Sbjct 762356 ATATACAAAAGGAATCAACCTTGCATCTTGTGCT 762323 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || ||| | || || | ||||| || | || Sbjct 762762 ATGCAAATTTTCGTCAAGACCCTTACAGGGAAAACTATAACTCTTGAAGTTGAAGCTTCC 762703 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| ||| |||| ||||||| ||| ||||| ||||| || || || ||||| Sbjct 762702 GATACTATTGAGAACGTGAAAGCAAAAATTCAA-GACAAGGAAGGAATCCCTCCAGACCA 762644 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || |||||| | ||||||| || || | ||||| || Sbjct 762643 ACAAAGGTTGATCTTTGCTGGTAAACAACTGGAAGATGGACGTACACTCTCTGATTATAA 762584 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||| ||||| || || ||| | || || | || |||||||||| Sbjct 762583 TATTCAAAAGGAATCGACTCTTCATCTTGTTCTTCGTCTGAGAGGAGGAA 762534 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || ||| | |||||| | ||||| || | || Sbjct 762990 ATGCAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 762931 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| ||| |||| ||||||| ||| ||||| ||||| ||||| || || || Sbjct 762930 GATACTATTGAGAACGTGAAAGCAAAAATTCAA-GACAAGGAAGGAATTCCGCCGGATCA 762872 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || ||| | ||||| | || || | |||||| || Sbjct 762871 ACAAAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACGCTCTCCGATTATAA 762812 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| ||||| || || ||| | || || Sbjct 762811 TATTCAAAAGGAATCGACTCTTCATCTTGTCCT 762779 >seq14 Length=11649563 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| |||||||| || ||||| | | || ||||| || ||||||||||| |||| | | Sbjct 1883801 AGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAACAATTAGAGGATGGTAG 1883860 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 ||| | ||||| |||||||| || ||||| || |||||||||||||| | |||| Sbjct 1883861 AACTTTATCAGATTATAATATTCAGAAGGAATCTACATTACATTTAGTGCTACGTTTAAG 1883920 Query 25220 AGGAGGA 25226 ||| ||| Sbjct 1883921 AGGTGGA 1883927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433298377833335