Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq15 134 2e-26 seq651 120 3e-22 seq1 120 3e-22 seq2 116 4e-21 >seq15 Length=11467329 Score = 134 bits (148), Expect = 2e-26 Identities = 167/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || |||||||| || |||| ||| |||||||| || || ||||| || || || | ||| Sbjct 5182321 ATATATGTATCAATCAACATAGAGTACATTTCTGAGTGCACATTTTCTATGGCGACTTGA 5182262 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || |||||||| | || || || | || ||||||||| ||||| || ||||| Sbjct 5182261 AAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCTTGACTAAATCGTTCGACGAGG 5182202 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || ||||| || || ||||| || || ||||| || || || | ||| ||| |||||| Sbjct 5182201 TTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATATGAAATGT 5182142 Query 93542 TTCTCATCA-TCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAA 93586 ||||||||| | ||||| | || ||| || ||| ||| | |||| Sbjct 5182141 TTCTCATCACTATTTAA-ATGATTCCAGTCAAATATATCCTGTGAA 5182097 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 |||| |||||||| ||||| |||||||||||||| |||||||| |||||||| ||||| | Sbjct 5182034 CTTTAGAAAGATCCACTTCCTCGACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 5181975 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698 ||| ||||| | |||| || ||||| | ||||| | | || || ||||| |||| Sbjct 5181974 GCCAAATGTCAGGCCATTGGATAGGAAAGACAACAAATCTACGTGGATTTTCTTTCAGTA 5181915 Query 93699 ACGGCTCTAGTTGTGG 93714 | || |||| || ||| Sbjct 5181914 ATGGTTCTAATTCTGG 5181899 Score = 111 bits (122), Expect = 2e-19 Identities = 159/223 (71%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 93111 AACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTT 93170 ||||| | |||| || || | |||||| || ||||| | ||||| | | |||| || Sbjct 5182663 AACCT-CATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTT 5182605 Query 93171 TCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAA 93230 | || ||||| || || | |||||||||||| ||| || ||||||||||| || |||| Sbjct 5182604 TTTTCAGCCAGAAAATAGCAGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAA 5182545 Query 93231 ATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAAT 93290 |||| || | |||||| | ||| | || | | ||||||| ||||| ||||||| Sbjct 5182544 ATGCAACCACACGTTCAGGAAATGTAGCACTCTCATGATTGATCCAATTTAACGCCCAAT 5182485 Query 93291 CGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 ||||||||| || || |||| |||| || || || || Sbjct 5182484 TAGCTTTTTTCGCAACGCATGGTAAATTTTCAATCGCATTGAA 5182442 >seq651 Length=1554602 Score = 120 bits (132), Expect = 3e-22 Identities = 86/98 (88%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAG 126321 |||| |||||||||||| |||||||||||||||| ||||| |||||||||||| ||||| Sbjct 57542 ACAGCTAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCTCTGGGAG 57483 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGG 126359 |||||||||||||||||||| | ||||| || |||| Sbjct 57482 CGTGGGTTCGAACCCCACACTTAGCAAATATTTTTTGG 57445 >seq1 Length=17153651 Score = 120 bits (132), Expect = 3e-22 Identities = 78/85 (92%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTG 126325 ||||||||||||| |||||||||||||||| ||||| |||||||||| | ||||||||| Sbjct 9240906 CAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGATTGGGAGCGTG 9240965 Query 126326 GGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||| ||||| Sbjct 9240966 GGTTCGAACCCCACACCTGGCAAAT 9240990 >seq2 Length=13603873 Score = 116 bits (128), Expect = 4e-21 Identities = 81/91 (89%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAGCGTGGG 126327 |||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||| Sbjct 10804097 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCTCTGGGAGCGTGGG 10804038 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTG 126358 |||||||||||||| | ||||| || ||| Sbjct 10804037 TTCGAACCCCACACTTAGCAAATATTTTTTG 10804007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556821757097160