Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1 107 1e-18 seq14 93.3 3e-14 seq41 87.8 1e-12 >seq1 Length=17153651 Score = 107 bits (118), Expect = 1e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 21829 GCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAG 21888 |||| ||||| || || ||||||| ||||| || ||||| ||||| | ||| |||| Sbjct 7345059 GCAACATGCAGATCTTCGTTAAAACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAG 7345118 Query 21889 CCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAA 21948 | | || || | | || |||| ||| || || ||||||||| | ||| | Sbjct 7345119 CTTCTGACACAATAGAGAATGTTAAAGCAAAGATCCAAGACAAAGAGGGTATTCCTCCAG 7345178 Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||| | | ||||||||||||||||||||||||||| || |||| | | |||| Sbjct 7345179 ACCAGCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCGGATT 7345238 Query 22009 ACAATATTCAGAAGGAATCTAC 22030 | || || ||||| || ||||| Sbjct 7345239 ATAACATCCAGAAAGAGTCTAC 7345260 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || | | ||||||| | || || ||| |||||||| ||||| || | | Sbjct 7345291 AATGCAGATCTCTGTTAAAACGCTTACTGGTAAAGCCATTACCTTGGAAGTTGATGTTCC 7345350 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || || || || ||||||||| | ||| | |||| Sbjct 7345351 CGACACAATAGAGAATGTGAAAGCTAAGATCCATGAAAAAGAGGGTATTCCTCCAGACCA 7345410 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||||||||||||||||||| || |||| | | ||||| || Sbjct 7345411 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7345470 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||||| || || || || ||| | || || | | || |||||| Sbjct 7345471 CATCCAGAAAGAGTCCACACTCCATTTAGTGTTGAGACTTCGTGGAGGA 7345519 >seq14 Length=11649563 Score = 93.3 bits (102), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||| | ||||||||||| |||||| |||| ||| | |||| | | ||||| Sbjct 1883817 CAACAAAGATTAATCTTTGCTGGAAAACAATTAGAGGATGGTAGAACTTTATCAGATTAT 1883876 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||||||||||||||| | ||| | || |||||||| |||| ||| Sbjct 1883877 AATATTCAGAAGGAATCTACATTACATTTAGTGCTACGTTTAAGAGGTGGA 1883927 >seq41 Length=919255 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 21912 AAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCT 21971 ||||||||| || || || || || | ||| | ||||||| || | ||||||||| Sbjct 762683 AAGCAAAAA-TTCAAGACAAGGAAGGAATCCCTCCAGACCAACAAAGGTTGATCTTTGCT 762625 Query 21972 GGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 22031 || |||||||| |||||| | || | | ||||| |||||||| |||||||| ||| Sbjct 762624 GGTAAACAACTGGAAGATGGACGTACACTCTCTGATTATAATATTCAAAAGGAATCGACT 762565 Query 22032 CTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||| | || | ||| | |||||||| Sbjct 762564 CTTCATCTTGTTCTTCGTCTGAGAGGAGGA 762535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358100318700586