Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq12 82.4 2e-12 seq9 82.4 2e-12 >seq12 Length=12868931 Score = 82.4 bits (90), Expect = 2e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 3366 ATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCAT 3425 |||||| || ||||||| ||| |||| || || | | || | ||| | |||||| | Sbjct 6917813 ATGTACCTTCCACAAATTTGGTGCTTCCGGGACCATTCAGAAGTTCGACGCCCTCTGCGT 6917754 Query 3426 CCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 ||| | ||| | ||||||||||||||||||| |||||||||||||||||| Sbjct 6917753 TCTCGCCCTCAACATCCTCAACGAGAAGATCTACATCTTCCTCTGGTTCTGGTTC 6917699 >seq9 Length=15655298 Score = 82.4 bits (90), Expect = 2e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 3366 ATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCAT 3425 |||||| || |||||||| ||| | || || | || | || | ||| || |||||| | Sbjct 3310269 ATGTACCTTCCACAAATATGGTGCGTCCGGTACGGTGCAGAAATTCGATGGTCTCTGCGT 3310210 Query 3426 CCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 | ||| ||| | |||||||||||||| ||| | |||||||||||||||||| Sbjct 3310209 GTTACCGTTAAACATCGTCAACGAGAAGATATACGTGTTCCTCTGGTTCTGGTTC 3310155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479234371500