Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq382 86.0 6e-12 >seq382 Length=5783 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || ||||| |||||||| | ||||| || || || || || || || | |||| Sbjct 1455 TGTGCCAGCATGTAAGTTAACAAAGAATAAGATGCGATATTGAATGGTACGCCAAGACCC 1396 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATT-G 20367 ||||| | || ||||| || ||||| || | ||| || | |||||||||| | Sbjct 1395 ATGTCAGCGCTTCTTTGATAAAGTTGACATGATAACTCTCCATTGTTCACATAAAATTGG 1336 Query 20368 ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACA 20427 ||| || |||||||||| || || ||||| || | ||| | |||||||| || | Sbjct 1335 ACAAGAC-AGTGACAGGGAGGTAGAGCCATTTCTGAAATGTCGCCTGGGTTCCATGCTGA 1277 Query 20428 CATAATGATTCTTCTATCGTGCGGATTATTTTTTAT 20463 ||| || |||| |||||| | ||| || || ||| Sbjct 1276 CATTATAATTCGTCTATCATTGGGAGAATGTTGTAT 1241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441341854249560