Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq41 84.2 2e-11 >seq41 Length=919255 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATG-AAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 || |||| || || ||||| ||||| ||| || | ||||| || || |||||||| | Sbjct 762308 CCACCTCGAAGACGAAGCACAAGATGCAAGGTTGAT-TCCTTTTGTATATTGTAATCAGA 762366 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| ||| | || |||||||| || || || || |||| | ||| || || | Sbjct 762367 -AAGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAG 762425 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCAC-ACTATCAGTAGATTCG 34077 | | | || ||||| ||||||| |||| |||| | |||||| || ||| Sbjct 762426 GAATTCCTTCCTTGTCTTGAATTTTT-GCTTTCACATTCTCAATAGTATCAGAAGCTTCA 762484 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | |||||||||||||| || || ||||| ||||| ||||||||| Sbjct 762485 ACTTCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 762535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397035256938418