Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq41 172 1e-37 seq172 150 4e-31 seq14 84.2 5e-11 >seq41 Length=919255 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || ||||||| || ||| ||||| |||||||| |||| | Sbjct 762764 CCACCACGAAGGCGAAGGACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAG 762823 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| ||||||||||| | ||| ||||| || ||||||| | |||||| || Sbjct 762824 AGCGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGA 762883 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || || ||||| ||||||||||| || |||| |||| | ||| ||| Sbjct 762884 ATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACT 762943 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || ||||| || || || ||||| ||||||||||| |||||||| || Sbjct 762944 TCAAGTGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCATGAT 762993 Score = 143 bits (158), Expect = 6e-29 Identities = 162/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || ||||||| || ||| ||||| |||||||| || | ||| || ||||| || Sbjct 762550 AAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCAGAGAGTGTACGTCCATC 762609 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTT 288377 ||| | |||||| || || ||||||| | ||||| ||||| ||||||||| || Sbjct 762610 TTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGG---TCTGGAGGGATTCCTTCCTT 762666 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 || || ||||| ||||||||||| || |||| |||| | ||| ||||| || || || Sbjct 762667 GTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGAGTTAT 762726 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || ||||||||||| || ||||| Sbjct 762727 AGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 >seq172 Length=1724251 Score = 150 bits (166), Expect = 4e-31 Identities = 164/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 ||||||| |||||||| || | || || ||||| ||||| ||||| ||||| || || | Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1092351 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 | ||||| || ||| | ||| |||||||| || ||||||||||| ||||| || |||| Sbjct 1092350 TAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTT 1092291 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | |||| ||| | ||||||||| || ||||| || || || |||| ||| || || | Sbjct 1092290 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1092231 Query 288464 ATATCTGCATTATGTTAT-TCTAATATTTTTAATA 288497 |||||||||| || | | |||| | |||||| || Sbjct 1092230 ATATCTGCATCTTGGTGTATCTACT-TTTTTAGTA 1092197 >seq14 Length=11649563 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 |||||||||||||| ||||| ||||| || ||||| |||| ||| | || || || Sbjct 1883446 CCTTCTTTATCCTGAATTTTTGCTTTAACATTTTCGATAGTATCTGATGCCTCGACCTCA 1883387 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || || | |||||| || ||||||||||| Sbjct 1883386 AGAGTGATAGTCTTGCCTGTTAAAGTCTTCACAAATATCTGCAT 1883343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179569623767902