Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq9 111 2e-19 seq41 107 2e-18 seq16 107 2e-18 seq8 102 9e-17 seq17 96.9 4e-15 seq4 87.8 2e-12 >seq9 Length=15655298 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||||||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 8164610 AAAAATTTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 8164551 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 8164550 TGACCACTATACTACCGAGGA 8164530 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 8161257 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTG 8161198 Query 57067 TACTACCGAGGATT 57080 ||||| |||||||| Sbjct 8161197 TACTAACGAGGATT 8161184 >seq41 Length=919255 Score = 107 bits (118), Expect = 2e-18 Identities = 173/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 41965 ATATATTAATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTT 42024 ||||||||| | |||| || |||| | ||| | ||| | |||||| || ||||||| Sbjct 762291 ATATATTAAATCATCGGCCACCTCGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTT 762350 Query 42025 GAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTC 42084 | ||||||||||||| || || ||| | || || | || ||||||||||| || | | Sbjct 762351 GTATATTGTAATCAGAAAGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACC 762410 Query 42085 GCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACC 42143 ||| ||||| | || | | ||||||| | ||| |||||| ||| | || | | Sbjct 762411 TCTGTTGGTCTGGAGGAATTCCTTCCTTGT-CTTGAATTTTTGCTTTCACATTCTCAATA 762469 Query 42144 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 42203 || || | ||| || || | || || ||||| || || || || |||||||| ||| Sbjct 762470 GTATCAGAAGCTTCAACTTCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATT 762529 Query 42204 TGCATT 42209 |||||| Sbjct 762530 TGCATT 762535 >seq16 Length=5274633 Score = 107 bits (118), Expect = 2e-18 Identities = 83/98 (85%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 3134818 AAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 3134759 Query 57058 TCACCACTATACTACCGAGGATTGAATATAT--AACTT 57093 | |||||||||||||||||||||| ||| || ||||| Sbjct 3134758 TGACCACTATACTACCGAGGATTGGATAAATGGAACTT 3134721 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3133523 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3133464 Query 57067 TACTACCGAGGATTGAATAT 57086 |||||||||||| | |||| Sbjct 3133463 TACTACCGAGGAATCTATAT 3133444 >seq8 Length=9733834 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| || |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 5715135 AAAAAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 5715194 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 5715195 TGACCACTATACTACCGAGGA 5715215 >seq17 Length=3558169 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 775328 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 775387 Query 57066 ATACTACCGAGGA 57078 ||||||||||||| Sbjct 775388 ATACTACCGAGGA 775400 >seq4 Length=14241696 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4776316 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 4776257 Query 57066 ATACTACCGAGGA-TTGAAT 57084 ||||| |||||| |||||| Sbjct 4776256 GTACTAACGAGGATTTGAAT 4776237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543174713992560