Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq41 132 5e-26 seq1 116 4e-21 seq172 100 3e-16 >seq41 Length=919255 Score = 132 bits (146), Expect = 5e-26 Identities = 160/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| ||||| | || ||||| ||||| || |||||||| | | |||||| | || Sbjct 762322 AAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAAAGTGTGCGCCCATC 762381 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || || || | || | || ||| ||||| |||||||||||||| || || Sbjct 762382 TTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTC 762441 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | |||||||||| ||| ||| | |||||| || || ||||| | ||||| | Sbjct 762442 TTG-AATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATTG 762500 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | || || || | |||||||| |||||||||||| Sbjct 762501 TTTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 762535 Score = 118 bits (130), Expect = 1e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| |||||||| |||||||| || ||||| | || || || | || Sbjct 762550 AAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCAGAGAGTGTACGTCCATC 762609 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| || || || || ||| | || | || || ||||| ||||| |||||||| || || Sbjct 762610 TTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTC 762669 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| |||||| ||||| || ||| | ||||| || || ||||| | ||||| | Sbjct 762670 TTGAATTTTT-GCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGAGTTATAG 762728 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || || | || || |||||||||||||| Sbjct 762729 TTTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 Score = 113 bits (124), Expect = 5e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| |||||||| |||||||| || ||||| | || || || |||| Sbjct 762778 AAGGACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAGAGCGTACGTCCGTC 762837 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| ||||| || ||| | || | || || || || || ||||||||||| || || Sbjct 762838 TTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTGTC 762897 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | |||||||||| || ||| | ||||| || || ||||| | || | | Sbjct 762898 TTG-AATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGTGTGATAG 762956 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || |||| || || ||||| || ||||| Sbjct 762957 TTTTTCCTGTCAGTGTCTTGACGAAGATCTGCAT 762990 >seq1 Length=17153651 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | ||| | ||||| ||| | || || ||||| || ||||| ||||| | Sbjct 7345290 CCTCCGCGAAGTCTCAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCGAA 7345231 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| || || ||||| ||| | || | ||||||||||| |||||| Sbjct 7345230 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7345171 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || ||||| ||||| | | |||||||| ||| ||| | ||| ||| || || || Sbjct 7345170 ATACCCTCTTTGTCTTGGA-TCTTTGCTTTAACATTCTCTATTGTGTCAGAAGCTTCAAC 7345112 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| | ||| | || || || || || ||||| ||||| || ||||| || Sbjct 7345111 TTCAAGAGTAATAGTTTTCCCTGTTAAGGTTTTAACGAAGATCTGCATGTT 7345061 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | ||||| ||| | || || ||||| || ||||| ||||||| Sbjct 7345518 CCTCCACGAAGTCTCAACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAA 7345459 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| || || ||||| ||| | || | ||||||||||| |||||| Sbjct 7345458 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7345399 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || |||||||| || | | || ||||| ||| ||| | ||| || | || || Sbjct 7345398 ATACCCTCTTTTTCATGGA-TCTTAGCTTTCACATTCTCTATTGTGTCGGGAACATCAAC 7345340 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | || | || || || || | ||||| || | || |||||| Sbjct 7345339 TTCCAAGGTAATGGCTTTACCAGTAAGCGTTTTAACAGAGATCTGCATT 7345291 >seq172 Length=1724251 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||||||||| || ||||||| | || || | ||||| | ||||| || ||| ||| Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1092351 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | || || ||||| || || ||||||||||| || || || ||||| |||||| | Sbjct 1092350 TAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTT 1092291 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | ||||| || || ||||| | || | ||| || || ||||||||||| || | Sbjct 1092290 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1092231 Query 64434 AAATTTGCATTTT 64446 | || ||||| || Sbjct 1092230 ATATCTGCATCTT 1092218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499609768653960