Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq41 141 7e-29 seq1 131 1e-25 seq172 116 3e-21 >seq41 Length=919255 Score = 141 bits (156), Expect = 7e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 14946 TCTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC 15005 || ||||||||| | | | || | ||| | ||| || || |||||||| |||||||| Sbjct 762304 TCGGCCACCTCGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATC 762363 Query 15006 GCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || | | | | ||||| |||||||| |||||| | ||||| | ||||||||| Sbjct 762364 AGAAAGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGG 762423 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||||||||||||||||| |||||| ||| ||| | || |||||||| | ||| Sbjct 762424 AGGAATTCCTTCCTTGTCTTGAATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTC 762483 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | || || ||||| ||||| || |||||||||||||||||||| Sbjct 762484 AACTTCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCAT 762534 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||| || || || ||||| || || ||||| ||| | | | ||||| Sbjct 762553 AACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCAGAGAGTGTACGTCCATCTTC 762612 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| ||||| | ||||| | |||||||| || |||||||||||||| Sbjct 762613 CAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCTTG 762672 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| ||| || | || ||||||||| | ||| || || | || || ||||| Sbjct 762673 AATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGAGTTATAGTTTT 762732 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || || || |||||||||||| Sbjct 762733 CCCTGTAAGGGTCTTGACGAAAATTTGCATA 762763 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || ||||| || || |||||| ||| | | ||||||| | ||| Sbjct 762787 ATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAGAGCGTACGTCCGTCTTCAAGTTG 762846 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| | ||||| | ||||| || ||||||||||||||||| |||||| Sbjct 762847 CTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTGTCTTGAATTTT 762906 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| || | || ||||||||| | ||| || || | || || ||||| ||||| Sbjct 762907 TGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGT 762966 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || || || || ||||| Sbjct 762967 CAGTGTCTTGACGAAGATCTGCAT 762990 >seq1 Length=17153651 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14947 CTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCG 15006 || || || || | ||| || |||||||| || || || ||||| || ||||| ||||| Sbjct 7345521 CTTCCTCCACGAAGTCTCAACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCT 7345462 Query 15007 CTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 ||| |||| | ||||||| |||||||||||| | ||||||||||| ||||| Sbjct 7345461 GAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 7345402 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 ||||| || || || ||| || || ||| ||| | ||||| || ||| | || Sbjct 7345401 GGAATACCCTCTTTTTCATGGATCTTAGCTTTCACATTCTCTATTGTGTCGGGAACATCA 7345342 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||||| |||||| || || ||||| ||| | || ||||| Sbjct 7345341 ACTTCCAAGGTAATGGCTTTACCAGTAAGCGTTTTAACAGAGATCTGCAT 7345292 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || || | ||| || |||||||| ||||| ||||| || ||||| ||||| Sbjct 7345290 CCTCCGCGAAGTCTCAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCGAA 7345231 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||||| |||||||||||| | ||||||||||| ||||| ||| Sbjct 7345230 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7345171 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || || || ||||| || ||||| ||| ||| | ||||| || || | ||| || Sbjct 7345170 ATACCCTCTTTGTCTTGGATCTTTGC-TTTAACATTCTCTATTGTGTCAGAAGCTTCAAC 7345112 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||||| ||||| ||||| | ||||| || || || ||||| || Sbjct 7345111 TTCAAGAGTAATAGTTTTCCCTGTTAAGGTTTTAACGAAGATCTGCATGTT 7345061 >seq172 Length=1724251 Score = 116 bits (128), Expect = 3e-21 Identities = 168/234 (72%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 14987 CTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15046 ||||||| || || ||||| ||| | | | ||||| ||||| || ||||| | | Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1092351 Query 15047 TCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTT 15106 | | ||| || || || |||||||||||||||||| ||||| ||||||| ||| Sbjct 1092350 TAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTT 1092291 Query 15107 CTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15166 | |||||||| |||||| || | ||| ||||||||||| |||| |||||| |||| Sbjct 1092290 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1092231 Query 15167 AAATTTGCATATT--TGAAATAAATTTTTTAATACTTATAAGAGA-TCAAAATG 15217 | || ||||| || || | | ||||||| || || || ||| | |||||| Sbjct 1092230 ATATCTGCATCTTGGTGTATCTACTTTTTTAGTA--TAAAAAAGATTGAAAATG 1092179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357367568794565