Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1 102 8e-17 seq41 93.3 4e-14 seq172 86.0 6e-12 >seq1 Length=17153651 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | || |||||| ||||| | ||||||||||| || || || ||||| Sbjct 7345291 TCCTCCGCGAAGTCTCAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCGA 7345232 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | ||| ||||| ||||| ||||| ||||||| |||||||| || ||||| Sbjct 7345231 AAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 7345172 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || ||||| ||||| ||| || ||| || | | || | ||||| | | || | Sbjct 7345171 AATACCCTCTTTGTCTTGGATCTT-TGCTTTAACATTCTCTATTGTGTCAGAAGCTTCAA 7345113 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| | || | ||||| || || | ||||| || || ||||||||| Sbjct 7345112 CTTCAAGAGTAATAGTTTTCCCTGTTAAGGTTTTAACGAAGATCTGCATG 7345063 >seq41 Length=919255 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | ||| | || || || ||||| ||||||||||| Sbjct 762308 CCACCTCGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAA 762367 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | ||||| |||||| ||||||| | ||| || || ||||| Sbjct 762368 AGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGA 762427 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||| | ||| ||| ||| || | | || | || || | | || || Sbjct 762428 ATTCCTTCCTTGT-CTTGAATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAAC 762486 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || || |||||||||||||| ||||| Sbjct 762487 TTCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCAT 762534 >seq172 Length=1724251 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 ||||||||||||| ||||| || || || ||| || | || |||||||| | | Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1092351 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 | | || |||||||| || || || || ||||||||| |||||| || | | || Sbjct 1092350 TAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTT 1092291 Query 127044 CGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 | | || || | | || || ||||| | ||| | ||||| || |||| |||||| ||| Sbjct 1092290 CAATAGTATCTGATGCT-TCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACA 1092232 Query 127103 AAAATCTGCAT 127113 || |||||||| Sbjct 1092231 AATATCTGCAT 1092221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475467461450160