Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq41 134 1e-26 seq1 127 2e-24 seq172 82.4 7e-11 >seq41 Length=919255 Score = 134 bits (148), Expect = 1e-26 Identities = 158/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| ||||||| |||||||||||||| ||||| ||||| || || | | ||| Sbjct 762325 CACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCA--GAAAGTGTGCGCCCATCT 762382 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 ||||||||||| || ||| | ||||| | || ||||| || ||||| ||||| || ||| Sbjct 762383 TCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCT 762442 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 ||||||||| ||| | || | || || |||| || ||||| ||||| | ||| Sbjct 762443 TGAATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATTGTT 762502 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || |||||||||||||||||||| Sbjct 762503 TTTCCTGTAAGGGTTTTTACAAAAATTTGCAT 762534 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | || | | || ||||| || || ||||||||||| ||||||||||| Sbjct 762533 ATTCCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCA 762592 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| |||| |||||| || || | ||||| | ||| ||||| || Sbjct 762593 GAGAGTGTACGTCCATCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGA 762652 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || |||||||||||| ||| | || | || | || ||||||| || Sbjct 762653 GGGATTCCTTCCTTGTCTTGAATTTTTGCTTTCA-CGTTCTCAATAGTATCGGAAGCTTC 762711 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | ||||| || || || || || || ||||||||||| Sbjct 762712 AACTTCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || ||||||||||| |||||||||||| || || || || Sbjct 762782 ACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAGAGCGTACGTCCGTCTTCA 762841 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| ||||| || | ||||| | ||| || ||||||||||| ||||| || |||||| Sbjct 762842 AGTTGCTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTGTCTTGA 762901 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 |||||| ||| | || | || | || ||||||| || ||||| || || | ||||| Sbjct 762902 ATTTTTGCTTTCA-CGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTT 762960 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || || ||||| Sbjct 762961 TCCTGTCAGTGTCTTGACGAAGATCTGCAT 762990 >seq1 Length=17153651 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||||||||| || |||||||||| ||| || || || || ||||| |||||||| Sbjct 7345293 ATTCCTCCGCGAAGTCTCAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCC 7345234 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | |||||| || || | ||||| || |||||||| || Sbjct 7345233 GAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 7345174 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||| ||||| || ||| ||| | |||| ||||| |||| || Sbjct 7345173 GGAATACCCTCTTTGTCTTGGATCTTTGCTTTAACATTCTCTATTGTGTCAGAAGCTTCA 7345114 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| ||||| || |||| ||||| || || || ||||| Sbjct 7345113 ACTTCAAGAGTAATAGTTTTCCCTGTTAAGGTTTTAACGAAGATCTGCAT 7345064 >seq172 Length=1724251 Score = 82.4 bits (90), Expect = 7e-11 Identities = 134/191 (70%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 45153 TTTTGGATATTATAATCGCTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATA 45210 ||||| |||||||||| ||||| | | | ||| |||||||| ||||| || | | Sbjct 1092408 TTTTGAATATTATAAT--CTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1092351 Query 45211 TCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTT 45270 | | |||||||| || || ||||| ||||| || || || ||||| ||| | || Sbjct 1092350 TAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTT 1092291 Query 45271 CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330 | | || || || | || ||||| || || | ||||| || || | |||||| |||| Sbjct 1092290 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1092231 Query 45331 AAATTTGCATC 45341 | || |||||| Sbjct 1092230 ATATCTGCATC 1092220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451971508925640