Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq15 93.3 7e-14 >seq15 Length=11467329 Score = 93.3 bits (102), Expect = 7e-14 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 160199 GTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTG 160258 ||| |||||| | | ||||||||||||| |||||||||||| ||||| | ||||| Sbjct 5182315 GTATCAATCAACATAGAGTACATTTCTGAGTGCACATTTTCTATGGCGACTTGAAAACCA 5182256 Query 160259 TAGAAATATGTCGCCTCCAGATAC-TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGC 160317 |||||| | |||| | | ||| || || || || | || | || | || || | Sbjct 5182255 TAGAAACAACGTGCCT-CGGTTACTTGTACTTCTTGACTAAATCGTTCGACGAGGTTCTC 5182197 Query 160318 ATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTC 160377 |||||| | || || | ||||||||||| || || || ||||| ||||||||| |||| Sbjct 5182196 ATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATATGAAATGTTTCTC 5182137 Query 160378 GTC 160380 || Sbjct 5182136 ATC 5182134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795099449681040