Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq172 98.7 2e-15 seq1 96.9 8e-15 seq41 93.3 1e-13 >seq172 Length=1724251 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||| | || || || | || ||| | ||||||||||| |||||||| || || || Sbjct 1092408 TTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAATA 1092349 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC-ACGGATTC 199560 ||||| ||||| || || ||||||||| ||||| || ||| |||| || ||| Sbjct 1092348 AGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGAT-TTTAGCTTTTACATTTTC 1092290 Query 199561 GACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAA 199620 | || |||| || |||||| || | ||||| || ||||| || | |||||||||||| Sbjct 1092289 AATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAAA 1092230 Query 199621 AATTTG 199626 || || Sbjct 1092229 TATCTG 1092224 >seq1 Length=17153651 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | ||||| || ||||| || |||| ||| || || | | ||| Sbjct 7345512 CGAAGTCTCAACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTT 7345453 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||| || || || || || ||||| | |||||||||||| ||| ||| || Sbjct 7345452 CTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCC 7345393 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| ||||| || | ||||| | || || ||||| Sbjct 7345392 TCTTTTTCATGGATCTTAGCTTTCACATTCTCTATTGTGTCGGGAACATCAACTTCCAAG 7345333 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || | ||||| || || ||||| ||| | || || Sbjct 7345332 GTAATGGCTTTACCAGTAAGCGTTTTAACAGAGATCTG 7345295 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | ||| || ||||| || |||| ||| || || | | ||| Sbjct 7345284 CGAAGTCTCAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCGAAAGAGTT 7345225 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||| || || || || || ||||| | |||||||||||| ||| ||| || Sbjct 7345224 CTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCC 7345165 Query 199529 TCTCGCTCCTGAATCTTTTGCTT 199551 ||| || || ||| ||||||| Sbjct 7345164 TCTTTGTCTTGGATC-TTTGCTT 7345143 >seq41 Length=919255 Score = 93.3 bits (102), Expect = 1e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || ||||| || | || || |||||||| | ||||| |||| | || Sbjct 762313 TCGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAAAGTGT 762372 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| || || || |||||||| | | ||| ||||| ||| |||||| Sbjct 762373 GCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGAATTCC 762432 Query 199528 TTCTCGCTCCTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| || ||||| |||||||| ||| || | || || | | ||| || || | Sbjct 762433 TTCCTTGTCTTGAAT-TTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACTTCAA 762491 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || ||||| ||||||||||| Sbjct 762492 GAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTG 762531 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || |||||||| |||||||| | || || |||| | || | ||||||| Sbjct 762551 AGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCAGAGAGTGTACGTCCATCT 762610 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| || || || || ||||| | | || ||||| ||| |||||||| || Sbjct 762611 TCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCT 762670 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| |||||| |||||| || | || || | | ||| || || | || || || Sbjct 762671 TGAAT-TTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGAGTTATAGT 762729 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || |||||||| Sbjct 762730 TTTCCCTGTAAGGGTCTTGACGAAAATTTG 762759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178836876430803