Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 9e-11 >seq1 Length=17153651 Score = 82.4 bits (90), Expect = 9e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||| | ||| |||| ||| || ||||| || || || || ||||| | | || Sbjct 7345276 CAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCGAAAGAGTTCTTCCATC 7345217 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || || || ||||| || || ||||| ||||||||||| | || | | ||| ||||| Sbjct 7345216 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7345157 Query 46501 CATGATCTTCTTCTTGAGC-GTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGG 46559 |||||| | ||| | | || | | ||||| | ||| || || | || || | Sbjct 7345156 TTGGATCTT-TGCTTTAACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAG 7345098 Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 |||| || || | |||||||| ||||| ||||| |||| Sbjct 7345097 TTTTCCCTGTTAAGGTTTTAACGAAGATCTGCATGTTGC 7345059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565198769722680