Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1 105 5e-18 seq172 91.5 1e-13 seq41 91.5 1e-13 >seq1 Length=17153651 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || |||||||| | | | | | |||| || | |||||| || |||| Sbjct 7345254 TCTTTCTGGATGTTATAATCCGAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAG 7345195 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || ||||||||||| || | || | || |||||||| || ||| ||||| || Sbjct 7345194 ATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTTGCTTTAACATTC 7345135 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 ||| |||||| | ||| || || | |||||| ||||| || ||||| ||||| ||| Sbjct 7345134 TCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTCCCTGTTAAGGTTTTAACG 7345075 Query 39709 AAGATCTGCATGT 39721 ||||||||||||| Sbjct 7345074 AAGATCTGCATGT 7345062 >seq172 Length=1724251 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 39530 CTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAA 39589 ||||||| ||||||||||| | || | ||| |||| |||||||| || || |||||| Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1092351 Query 39590 TTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG 39649 | | ||| |||||||| | || | ||||| ||||| ||||| ||| | | Sbjct 1092350 TAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTT 1092291 Query 39650 CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGA 39709 | | || |||| ||| || || | || || |||||||| || |||||||| || | Sbjct 1092290 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1092231 Query 39710 AGATCTGCAT 39719 | |||||||| Sbjct 1092230 ATATCTGCAT 1092221 >seq41 Length=919255 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/242 (69%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 39479 ATATCCAATCATCG-CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGT 39537 |||| |||||||| || ||||| | ||| || || | |||||| || ||| |||||| Sbjct 762293 ATATTAAATCATCGGCCACCTCGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGT 762352 Query 39538 ATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGC 39597 ||||| ||||| | | ||| |||| ||||||||||| || | || || || | | Sbjct 762353 ATATTGTAATCAGAAAGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTC 762412 Query 39598 TGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTG 39657 || || || | || | ||||| ||||| |||||| ||| | || | | || Sbjct 762413 TGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGAATTTTTGCTTTCACATTCTCAATAGTA 762472 Query 39658 TCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGC 39717 || | ||| || || | ||| |||||||| || || | |||||||| || || ||| Sbjct 762473 TCAGAAGCTTCAACTTCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGC 762532 Query 39718 AT 39719 || Sbjct 762533 AT 762534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347345853922697