Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq9 394 1e-104 seq3 129 7e-25 seq7 95.1 2e-14 seq15 84.2 3e-11 >seq9 Length=15655298 Score = 394 bits (436), Expect = 1e-104 Identities = 931/1384 (67%), Gaps = 38/1384 (3%) Strand=Plus/Plus Query 6496 TTCGACCGTTCCTTTCATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTT 6555 ||| || || | ||||| | | | ||||| || ||||||||||| || ||| | Sbjct 1033846 TTCCACTGTGCTCTTCATGTTAAAGCAGTAAGACTCAAGACCATTCTTAGCAGCGATAGT 1033905 Query 6556 TTTCGCGTACTTTTCATCTTCATCTTTA---TACTTTTCCGCATCTTGGACCATCTTTTC 6612 || | | || || || || || || || ||||| || || | |||||| |||| Sbjct 1033906 TT---CTTTCTGTTTCTCATCCTCGCTACGATATTTTTCAGCTTCATTGACCATTCTTTC 1033962 Query 6613 AATGTCTTCTTTCGATAA-TCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTAC 6671 |||||||||||| | ||| | || || ||||| ||||| ||||| || | ||| | Sbjct 1033963 AATGTCTTCTTT-GCTAAGACGACCTTTGTCATTGGTAATGGTAATTTTGTTCTCTTTCC 1034021 Query 6672 CCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTA 6731 | | | ||||| | ||| ||||||| ||||||||| ||||||| || || | | Sbjct 1034022 CAGTAGATTTATCCACTGCAGAGACATTCAGAATACCATTGGCATCAATGTCAAATGTGA 1034081 Query 6732 CATTAATTTGTGGTGTACCCCTC--GGTGCGGCTGGAATACCCGTTAAATCAAATGTACC 6789 | | ||| || | | || |||| || || | ||||||||| | | |||||| |||| Sbjct 1034082 CTTCAATCTGAG--GAACTCCTCGAGGGGCTGGTGGAATACCACTGAGCTCAAATTTACC 1034139 Query 6790 AAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGC 6849 | ||| |||||||| | | | | ||||||||||||||| |||| ||| || | Sbjct 1034140 TAATAAGTTGTTATCCTTTGTCATAGCACGTTCACCTTCATAAACTTGAATCAATACTCC 1034199 Query 6850 AGGTTGATTATCTTGTGCCGTTGAGAAGATTTG-TTCTTTCTTAGATGGAATCGTCGTAT 6908 ||||||||||| || | |||| |||| ||| | || | |||||| || |||| Sbjct 1034200 TGGTTGATTATCAGCATATGTAGTGAAGGTTTGAGTCTGT-TTTGTTGGAATAGTAGTAT 1034258 Query 6909 TTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTG 6968 ||||| |||| | ||||||| |||||| |||||| | |||||||||| ||||| Sbjct 1034259 TTCTCTTGATAAGAGCAGTCATAACACCACCAGCAGTTTCAATACCAAGAGACAAAGGTG 1034318 Query 6969 TCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGG 7028 | || || | || | || ||||| || ||| | ||||| || || || | Sbjct 1034319 TTACATCAAGAAGCAGTAGATCTTGTACTTCTTCAGACTTGTCACCATGTAGAATAGCAG 1034378 Query 7029 CTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTT 7088 |||| || | || || || || || || ||||| ||||| || | || |||| ||| | Sbjct 1034379 CTTGTACAGCAGCTCCATAAGCTACAGCTTCATCAGGGTTGATAGACTTGTTCAATTCCT 1034438 Query 7089 TACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGA 7148 | || ||||| | ||| | | | ||| || || || || || || |||||||| | Sbjct 1034439 TCCCATTAAAGAAGTCCTGCAGTAACTTTTGGATCTTAGGAATACGCGTGGATCCACCAA 1034498 Query 7149 CCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGA 7208 | |||||||| || | | | | |||||| || || | || || | | |||||| | Sbjct 1034499 CTAAAACGATATCGTGAATCTGAGCTTTATCCATTTTGGCATCGCGCAACGATTTTTCCA 1034558 Query 7209 CAGGTTCCA---TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGG 7265 | || || | | | | || || | || ||| || || || || || || | || Sbjct 1034559 CTGGCTCGAGTGTTCCTCTA---AAGAGATCAGCACAAAGCTCTTCGAATCGAGCTCTGG 1034615 Query 7266 TAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTG 7325 | || || ||||| || |||| || || || | |||||||||||| || | | ||| | Sbjct 1034616 TGATTGAGGTATAAAAGTCAATTCCCTCATAGAGCGAATCAATTTCGATACTAGCTTGAG 1034675 Query 7326 CCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCAC 7385 | |||||| || || || || || || || || || |||| |||||||||||||| | Sbjct 1034676 TAGACGAAGACAAAGTGCGTTTCGCACGTTCGCAAGCTGTTCTCAAACGACGAAGGGCGC 1034735 Query 7386 GCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAA 7445 | || | | | ||||||||| | ||| ||||| || |||| |||| || Sbjct 1034736 GTTTATTTGCAGTCAGATCTTTCTTGTATTTGCGTTTGAATTCTTGGACAAAGT---GAT 1034792 Query 7446 GGAGTCT-CGA--ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGA 7502 || | ||| ||||||||||| || || | || || || || || || | |||| Sbjct 1034793 TGACCATACGATTGTCGAAATCTTCGCCGCCAAGATGAGTGTCTCCTGCTGTTGACTTGA 1034852 Query 7503 CTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGT 7562 | ||||| || || |||| ||| | || | || |||||||| || |||||||| |||| Sbjct 1034853 CCTCAAAAATGCCATCTTCGATGGTCAAAATTGAGACATCAAAGGTGCCACCACCAAGGT 1034912 Query 7563 CAAAAATGAGTACGTT-CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCC 7621 |||| || || ||||| || || || || || ||||| | ||||| || || || Sbjct 1034913 CAAAGATTAGGACGTTGCGCTCGGTGGTAGTT-TTTTTATCCAAGCCGTAAGCAATGGCG 1034971 Query 7622 GCCGCCGTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATC 7680 || || || ||||| || || ||||| |||||| |||| || | ||| || | || || Sbjct 1034972 GCAGCGGTGGGTTCGTTGATGATACGTAAGACA-TTCAAACCCGAAATGGTGCCAGCGTC 1035030 Query 7681 TTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGT 7740 || || || || || ||||| ||||| ||||| || || || || | || || | | Sbjct 1035031 CTTGGTTGCCTGACGCTGCGAGTCGTTGAAGTAAGCAGGTACAGTGATCACGGCATTGCT 1035090 Query 7741 GACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGA 7800 ||| |||| || || || | ||| || | |||||||| || || ||||| ||| Sbjct 1035091 GACACTCTTGCCAAGGTATGCTTCAGCAGTTTCTTTCATCTTTACCAGGACCAT---TGA 1035147 Query 7801 AATC---TCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGG 7856 | || ||||||| | | | || ||||| || || || ||| |||| ||| ||| Sbjct 1035148 ACTCACTTCTTCAG-GGAAGAAAGTCTTCGTCTCTCCTTTGTAATATACTTGAATTTTGG 1035206 Query 7857 GTTT 7860 |||| Sbjct 1035207 GTTT 1035210 >seq3 Length=14656165 Score = 129 bits (142), Expect = 7e-25 Identities = 194/273 (71%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 6641 TCATTCGTAATCGTAATCTTTTCG-GATTTACCCGAGGCCTTATCTTCAGCACTTACATT 6699 ||||| ||||| ||||||||| ||||| || | |||| || |||||| ||| | Sbjct 1111926 TCATTGGTAATAACAATCTTTTCCCGATTT-CCAGTTCCCTTGTCCTCAGCAGATACTTG 1111984 Query 6700 CAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGC 6759 ||||||||||| ||||| | || || | || | |||||||||| |||| || ||||| Sbjct 1111985 TAAAATACCATTAGCATCGATTTCAAAGGTAACTTCAATTTGTGGTATACCTCTTGGTGC 1112044 Query 6760 GGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACG 6819 | ||| || || || | ||| ||| |||| || | | ||| || | | | | ||| Sbjct 1112045 TGGTGGGATGCCAGTAAGATCGAATTTACCCAGAAGATGGTTGTCTTTTGTCATTGGACG 1112104 Query 6820 TTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGAT 6879 ||||||||| || |||| || || || | | |||||||||| || || |||||||| Sbjct 1112105 TTCACCTTCGTATACTTGGATAGTTACTGTATGTTGATTATCAGACGCAGTAGAGAAGAT 1112164 Query 6880 TTGTTCTTTCTTAGATGGAATCGTCGTATTTCT 6912 ||| |||||| | |||||| ||||| || Sbjct 1112165 TTGCGATTTCTTGGTCGGAATCACGGTATTCCT 1112197 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/152 (72%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTC 7597 |||||||| ||||||||||||| |||||||| | |||||| | || | ||| ||| Sbjct 1113014 ACATCAAAGGTACCACCACCCAAGTCAAAAACTAACACGTTCTTTTCTCCATCT---TTC 1113070 Query 7598 TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657 ||||| | ||| || || || || || || || |||||||| || || | | | | Sbjct 1113071 TTATCCAAACCATAAGCAATTGCAGCAGCTGTAGGTTCATTGATGATTCTCATAACGACA 1113130 Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689 || |||| |||||| | |||||||| || || Sbjct 1113131 AGTCCAGAAATAGTACCTGCATCTTTAGTAGC 1113162 >seq7 Length=18145390 Score = 95.1 bits (104), Expect = 2e-14 Identities = 197/285 (69%), Gaps = 10/285 (4%) Strand=Plus/Plus Query 11370 ACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCACGCTCATCGTTTG-CCGCAA 11428 |||||||||||| || | ||| |||| ||| | ||| | || || || |||| | Sbjct 11144388 ACCATCCATTTCAACTAGAAGTTGATTAAGTGTATTTTCTTGTTC--CGAATGACCGCCA 11144445 Query 11429 ACCCATTCATACTTC---TTTTCTTACCAATCGCATCAATTTCATCTATAAAGATAATAC 11485 | ||| || | ||||||| |||| ||||| || ||||| ||||| | |||| Sbjct 11144446 A-AGTTTCGGCCTCCCCTTTTTCTT-CCAACAGCATCGATCTCATCAATAAATAATATAC 11144503 Query 11486 ACGGTTGATTTTCACGTGCCAATTCAAATATATCACGGACTCTTTTTGCGCCTACGCCTA 11545 |||| || || ||||||||| | || ||||| || |||||| || || || || | Sbjct 11144504 ACGGAGCATGTTTCCGTGCCAATGCGAACATATCTCGAACTCTTGATGGACCAACACCAA 11144563 Query 11546 CAAACATTTCAACGAACGATGACCCCGA-ACACTGAATAAAAGGAACGGAAGATTCACCC 11604 | |||||||| | ||| || || || ||||| ||||||||| || | |||||| Sbjct 11144564 CGAACATTTCCAAAAACTCAGAACCTGATACACT-AATAAAAGGTACATTTGCTTCACCA 11144622 Query 11605 GCTATAGCACGTGCTAAAAGTGTTTTACCTGTACCTGGTTTACCT 11649 ||| |||| || || | |||||||| ||||| ||| |||| Sbjct 11144623 GCTGTAGCTTTAGCCAATAACGTTTTACCAGTACCCGGTGGACCT 11144667 Score = 89.7 bits (98), Expect = 7e-13 Identities = 155/219 (71%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 22567 GTTAATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTATAATGTTCAACCACGAA 22626 || || ||||||||| |||| |||||||||||| ||||||||| | || || || ||| Sbjct 4798854 GTAAACTATAGAGAAGCATATAATATGTTTGCATGTAATGGTATATTATTTAATCATGAA 4798795 Query 22627 TCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAACACTCGGTGTCGCTAATAT- 22685 || | | || || ||||| || ||| ||||| |||| | | || || || Sbjct 4798794 AGTCCTCGTAGAGGAGAGAACTTTGTTACAAGAAAAGTAACTAGATCTATAGCGAAGATA 4798735 Query 22686 CAGTGCAGGTAAACAAAAATGTT-TATACCTTGGTAACCTAGATGCGAAACGAGATTGGG 22744 |||| |||| || || ||||| | | || || || ||||||| ||||||||||||| Sbjct 4798734 CAGT-TAGGTTTAC-AAGATGTTCTTGAACTAGGAAATTTAGATGCTAAACGAGATTGGG 4798677 Query 22745 GTCATGCACGCGATTACGTGAAATGTATGTGGAAAATAT 22783 | |||||| ||||| || || ||| | | || |||| Sbjct 4798676 GACATGCAAAAGATTATGTTGAA-GTAAGAGAAACATAT 4798639 Score = 84.2 bits (92), Expect = 3e-11 Identities = 83/106 (78%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 22431 AAAAACGTGTAAA-TTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAA 22489 ||||| |||||| ||||| || || || ||||| || || || || | ||||| | || Sbjct 4799070 AAAAATCTGTAAAATTTTACCATGCGTCAACATCTGAACTTTATGGCAGAGTAACTCAAG 4799011 Query 22490 CTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGG 22535 |||||||||||||| || || |||||||| |||||||| ||||| Sbjct 4799010 TACCACAAAATGAAAAAACTCCATTTTACCCTCGTTCACCGTATGG 4798965 >seq15 Length=11467329 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 115372 TCATCTCGACTTATGAGTTCATTACTAAAACATAAACCTGGAAGTAACCCTCTCTTTTTT 115431 ||||||| | || || ||||||||||| | ||||| | ||| ||||| ||||| Sbjct 5182659 TCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTTTTTTC 5182600 Query 115432 AACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCAACACACGCAAAGGCT 115491 | ||| ||||||||| ||||||||| ||||| |||||||| || ||||| || Sbjct 5182599 AGCCAGAAAATAGCAGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAAATGCA 5182540 Query 115492 AATAAACGTTCAGCAAATG 115510 | | |||||||| ||||| Sbjct 5182539 ACCACACGTTCAGGAAATG 5182521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635088269251560