Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6 91.5 2e-13 >seq6 Length=12724418 Score = 91.5 bits (100), Expect = 2e-13 Identities = 208/308 (68%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 112272 GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTAC 112331 ||| | |||| ||||||||| | |||||| || || || || || || |||||||| Sbjct 10925356 GATTTATGGACAGCTATTCTTATTTCTCAAGTTGAAACAGGAACTCCTTACATGCTTTAT 10925415 Query 112332 AAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAAC 112391 ||||| ||||| | || ||||| | ||||| || |||||| || || Sbjct 10925416 AAAGATCATTGTAATCGTAAATCAAATCATCAAAATTTAGGGACGATCAAAAGCAGTAAT 10925475 Query 112392 CTCTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGC 112450 | |||||||||||| | ||| || ||| | |||||| | ||||| || || | || Sbjct 10925476 TTATGTACAGAAATCGTACAATATTCCAGTC-CAGATGAAATTGCTGTATGCAATTTAGC 10925534 Query 112451 ATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGATTATGAAAAAC 112509 |||||||| | | || ||| | ||||| | |||||||||||| |||||||| Sbjct 10925535 TTCAATCGCAGTGAATATGTTTGTAAACTCCAG-TAATCAGACATTTGATTTTGAAAAAC 10925593 Query 112510 TCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTT 112569 | | |||| || |||| ||| || || || ||| | |||| ||| |||| || Sbjct 10925594 TGCGAAAAGTAACAAAAATTGTTACTTGTAATTTAGACAAAATTATCGATGTGAATTATT 10925653 Query 112570 ACCCCGTT 112577 | || ||| Sbjct 10925654 ATCCAGTT 10925661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620698878198480