Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03]
5,609 sequences; 248,654,244 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq6 91.5 2e-13
>seq6
Length=12724418
Score = 91.5 bits (100), Expect = 2e-13
Identities = 208/308 (68%), Gaps = 4/308 (1%)
Strand=Plus/Plus
Query 112272 GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTAC 112331
||| | |||| ||||||||| | |||||| || || || || || || ||||||||
Sbjct 10925356 GATTTATGGACAGCTATTCTTATTTCTCAAGTTGAAACAGGAACTCCTTACATGCTTTAT 10925415
Query 112332 AAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAAC 112391
||||| ||||| | || ||||| | ||||| || |||||| || ||
Sbjct 10925416 AAAGATCATTGTAATCGTAAATCAAATCATCAAAATTTAGGGACGATCAAAAGCAGTAAT 10925475
Query 112392 CTCTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGC 112450
| |||||||||||| | ||| || ||| | |||||| | ||||| || || | ||
Sbjct 10925476 TTATGTACAGAAATCGTACAATATTCCAGTC-CAGATGAAATTGCTGTATGCAATTTAGC 10925534
Query 112451 ATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGATTATGAAAAAC 112509
|||||||| | | || ||| | ||||| | |||||||||||| ||||||||
Sbjct 10925535 TTCAATCGCAGTGAATATGTTTGTAAACTCCAG-TAATCAGACATTTGATTTTGAAAAAC 10925593
Query 112510 TCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTT 112569
| | |||| || |||| ||| || || || ||| | |||| ||| |||| ||
Sbjct 10925594 TGCGAAAAGTAACAAAAATTGTTACTTGTAATTTAGACAAAATTATCGATGTGAATTATT 10925653
Query 112570 ACCCCGTT 112577
| || |||
Sbjct 10925654 ATCCAGTT 10925661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620698878198480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |