Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq16 96.9 4e-15 >seq16 Length=5274633 Score = 96.9 bits (106), Expect = 4e-15 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 154864 TGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGAC 154923 |||| ||| | ||||| ||||| || || || | || || ||||| | | | Sbjct 3661858 TGTCTTGTCTGATGATAACATATCCGTCGACGAACGGCGTGTTTGAGGAGACCGTCGCTG 3661799 Query 154924 AGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAA 154983 | || ||| | || |||||||| ||| ||||| || ||||| || || || || | | Sbjct 3661798 ATATTTGTGATATGGTTCATGAAGCTGGAGGTCAAGTGTATCTAGACGGTGCTAACATGA 3661739 Query 154984 ATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACT 155043 |||| || || || ||| || |||| ||||| || || | |||||||| | Sbjct 3661738 ATGCTCAAGTTGGTCTATGTCGTCCTGGTGATTATGGCAGTGACGTTTCGCATCTAAATT 3661679 Query 155044 TACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTG 155103 |||| |||||||||||||| || || || |||||||| ||||| |||||||| || | Sbjct 3661678 TACACAAAACATTCTGTATACCTCACGGCGGTGGAGGACCTGGAAGTGGTCCTATTGGAG 3661619 Query 155104 T 155104 | Sbjct 3661618 T 3661618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579172189942560