Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq16 114 2e-20 >seq16 Length=5274633 Score = 114 bits (126), Expect = 2e-20 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 159539 TGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGAC 159598 |||| ||| | ||||| |||||||| || || | || || ||||| | | || Sbjct 3661858 TGTCTTGTCTGATGATAACATATCCGTCGACGAACGGCGTGTTTGAGGAGACCGTCGCTG 3661799 Query 159599 AGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAA 159658 | || ||| | || |||||||| ||| ||||| || ||||| || ||||| || | | Sbjct 3661798 ATATTTGTGATATGGTTCATGAAGCTGGAGGTCAAGTGTATCTAGACGGTGCTAACATGA 3661739 Query 159659 ATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACT 159718 |||| || || |||||| || |||| ||||| || || | |||||||| | Sbjct 3661738 ATGCTCAAGTTGGTCTATGTCGTCCTGGTGATTATGGCAGTGACGTTTCGCATCTAAATT 3661679 Query 159719 TACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTG 159778 |||| || ||||||||||| || || || |||||||| ||||| ||||||||||| | Sbjct 3661678 TACACAAAACATTCTGTATACCTCACGGCGGTGGAGGACCTGGAAGTGGTCCTATTGGAG 3661619 Query 159779 T 159779 | Sbjct 3661618 T 3661618 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 158579 TAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCA 158638 |||| || || || | || |||||||| |||||||| ||||| || || ||||| || | Sbjct 3662981 TAGCCCTTCAAACACGCGAACAGCATATTAGAAGAGATAAAGCTACTAGCAACATTTGTA 3662922 Query 158639 CAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATG 158698 | ||||||||||| ||||| |||||||||| | | ||||| | || ||||| | || | Sbjct 3662921 CTGCACAAGCACTACTGGCAAATATGTCTGCGATGTATGCTGTGTACCATGGACCTGAAG 3662862 Query 158699 GACTA 158703 || || Sbjct 3662861 GAATA 3662857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588009970260240