Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq41 167 5e-36 seq1 154 3e-32 seq172 127 5e-24 >seq41 Length=919255 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || | || || || ||||| ||||||||||| | ||| || | ||||||||| Sbjct 762326 ACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAAAGTGTGCGCCCATCTTCC 762385 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || ||||| |||||||| | | ||||||||||||||||| ||||| ||||||||| Sbjct 762386 AATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGA 762445 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 |||||| || || |||||||| || || ||| ||| |||||||| || | || ||| Sbjct 762446 ATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATTGTTTTT 762505 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | |||||||| || | ||||||| Sbjct 762506 CCTGTAAGGGTTTTTACAAAAATTTGCATT 762535 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| |||||||| || || ||||||||||| ||||| | || || | |||||||| Sbjct 762553 AACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCAGAGAGTGTACGTCCATCTTC 762612 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || ||||| || ||||| | | ||||||||||||||| || ||||| |||||||| Sbjct 762613 CAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCTTG 762672 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||||| || ||||||||||| || || ||| ||| |||||||| || | || || Sbjct 762673 AATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGAGTTATAGTTTT 762732 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | || || ||||| | |||||| Sbjct 762733 CCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| |||||||| || || ||||||||||| ||||||| || || | || ||||| Sbjct 762782 ACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAGAGCGTACGTCCGTCTTCA 762841 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || || ||||| | | |||||| || || ||||| ||||| ||||||||| Sbjct 762842 AGTTGCTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTGTCTTGA 762901 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 |||||| || ||||||||||| || || ||| ||| |||||||| || | || ||| Sbjct 762902 ATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTTT 762961 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || ||||| | ||||| Sbjct 762962 CCTGTCAGTGTCTTGACGAAGATCTGCAT 762990 >seq1 Length=17153651 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || | || || |||||||| || || || ||||| | ||||||||| Sbjct 7345281 AGTCTCAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCGAAAGAGTTCTT 7345222 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || || || || ||||| | || || |||||||||||||| || ||| Sbjct 7345221 CCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCT 7345162 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| || ||| || || ||||| || ||||| ||| ||| |||||||| ||| Sbjct 7345161 TTGTCTTGGATCTTTGCTTTAACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTA 7345102 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| || ||||| ||||| | ||||| Sbjct 7345101 ATAGTTTTCCCTGTTAAGGTTTTAACGAAGATCTGCAT 7345064 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || | || || ||||||||||| || || || ||||| | ||||||||| Sbjct 7345509 AGTCTCAACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTT 7345450 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || || || || ||||| | || || |||||||||||||| || ||| Sbjct 7345449 CCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCT 7345390 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || || || ||||| || ||||| | | || ||||| | |||| Sbjct 7345389 TTTTCATGGATCTTAGCTTTCACATTCTCTATTGTGTCGGGAACATCAACTTCCAAGGTA 7345330 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | | || || || | ||||| || | | |||||| Sbjct 7345329 ATGGCTTTACCAGTAAGCGTTTTAACAGAGATCTGCATT 7345291 >seq172 Length=1724251 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 ||||||||||||| ||||| | ||||| | |||||||| | ||||| || || || | Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1092351 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 |||| ||||| || || || ||||| ||||| ||||| || ||||| || || || | Sbjct 1092350 TAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTT 1092291 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 |||| || || || ||| ||||||||||| | || || || ||||||||||| || | Sbjct 1092290 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1092231 Query 195131 ACACTTGCAT 195140 | | ||||| Sbjct 1092230 ATATCTGCAT 1092221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109401866758103