Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03]
5,609 sequences; 248,654,244 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq6 178 1e-39
seq15 149 7e-31
>seq6
Length=12724418
Score = 178 bits (196), Expect = 1e-39
Identities = 228/312 (73%), Gaps = 2/312 (1%)
Strand=Plus/Minus
Query 48270 TTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329
|| ||| ||||| ||||||| || | ||| || | ||||| ||||||||||||||||||
Sbjct 10924965 TTACCAATATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAA 10924906
Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389
||||| || | | | ||||||| |||||| ||||||||||| | ||||| || |||||
Sbjct 10924905 TATATAGCAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 10924846
Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449
|| || ||||| | |||||| | | |||||| |||| |||| || || | ||
Sbjct 10924845 TTGTATACTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 10924786
Query 48450 CTTCCACTAGCTCTTATATTA-CTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508
| || || |||| ||| | || | || | || |||||||| || ||| ||
Sbjct 10924785 GTGCCTCTTGCTCGAATACAATGTACATTAAGT-CCAATACCACCAGCTGATTTGCTAAT 10924727
Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568
|| ||||| | ||| | |||||||||||||| ||||| |||||||| |||| |||
Sbjct 10924726 AAGTGCACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAG 10924667
Query 48569 TAGAAAACAACT 48580
|| |||||||||
Sbjct 10924666 TAAAAAACAACT 10924655
Score = 147 bits (162), Expect = 2e-30
Identities = 208/294 (71%), Gaps = 2/294 (1%)
Strand=Plus/Minus
Query 47247 ttttctataattttgtttttta-attcatttgaccaaagttttcgttcagttaatgtttt 47305
||| ||||||||| ||||| | |||| | |||||| | || |||||| | |
Sbjct 10926369 TTTGCTATAATTTCATTTTTCATATTCTCATC-CCAAAGATCTCTTTCAGTCAGATCTCG 10926311
Query 47306 taaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATT 47365
||| | ||||||||| || | |||||| |||||||| | ||||| | ||| |||||
Sbjct 10926310 TAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCATAAATATT 10926251
Query 47366 ACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGG 47425
||| ||||||||||||||||||||||||||||| || ||||| ||||| || || || ||
Sbjct 10926250 ACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGACGCCGTTGG 10926191
Query 47426 CATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNG 47485
||| | || | |||||| ||| || ||||||| ||| || |
Sbjct 10926190 CATAGGGGCGATTAATAAAGAATTCCTAACTCCATGTTTAGCAATTTTTTCTTTCAGAAT 10926131
Query 47486 TTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539
| |||| | ||| | ||| | |||| ||||||||| | |||||||| | |||
Sbjct 10926130 TGTCCAGTTCCATAAATCAGTTGGAGTAACATTCCACATGTCATATTGTAAAAT 10926077
Score = 116 bits (128), Expect = 4e-21
Identities = 116/148 (78%), Gaps = 2/148 (1%)
Strand=Plus/Minus
Query 48916 CACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATA 48975
||||||| |||| |||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 10924126 CACTAAAACTTTTCTTTGTTTCTTTATGAAGATTAGATATTGCAATTCTTGCAGCTAATA 10924067
Query 48976 TAGCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATATCT 49034
| |||||||||||||| | || || ||| || | |||| ||||| | | |||
Sbjct 10924066 TCGCATAATCTGGATGTTTAGTAGT-CATAGTTGCGGCAGTTTCAGCTGCAAGATTGTCT 10924008
Query 49035 AATTCTTTAGTAGTTACACCTGTATATA 49062
||||| ||| |||||||||| |||||
Sbjct 10924007 AATTCAACAGTGGTTACACCTGAATATA 10923980
Score = 109 bits (120), Expect = 6e-19
Identities = 144/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924
|||||| |||| | ||| || || |||| ||| |||||||| | |||| |||| | | |
Sbjct 10925558 ACAAACATATTCACTGCGATTGAAGCTAAATTGCATACAGCAATTTCATCTGGACTGGAA 10925499
Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT- 47983
||||||| ||||| | ||||| ||||| | |||||| || || ||||||||||||||
Sbjct 10925498 TATTGTACGATTTCTGTACATAAATTACTGCTTTTGATCGTCCCTAAATTTTGATGATTT 10925439
Query 47984 -ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAG 48042
||| ||||| || || |||||||| |||| ||||| ||||| | ||||
Sbjct 10925438 GATTTACG--ATTACAATGATCTTTATAAAGCATGTAAGGAGTTCCTGTTTCAACTTGAG 10925381
Query 48043 ATTCAATGATAGATTTCCA 48061
| || |||| | ||||
Sbjct 10925380 AAATAAGAATAGCTGTCCA 10925362
Score = 104 bits (114), Expect = 3e-17
Identities = 181/263 (69%), Gaps = 8/263 (3%)
Strand=Plus/Minus
Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638
|||||||||||| | || | ||| | | | ||| | || |||||||||||| ||||
Sbjct 10924583 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 10924524
Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC----CCATTGATG 48694
| |||||||| || || || ||||| ||| | ||| ||||| |||| ||||
Sbjct 10924523 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGGATG 10924464
Query 48695 TATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTAT 48754
|| | || | ||||||||| | ||| ||||||||||| | ||| | |||
Sbjct 10924463 GCAACT----GCAACTCTCATTAACATGTGTTGTGGTCTTTCAACTACTTTCCCTTGTAT 10924408
Query 48755 TTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTT 48814
||| || | ||| | |||| | ||| || |||||||| || || || |||||| |
Sbjct 10924407 TTTTAATAAATAACTTCTTTCAAGTGTCTTGAAACCAAAGTAATTATAACTAAAGTCTCT 10924348
Query 48815 ATCATTAATAATTGATGAATTTA 48837
||||| ||| || | |||||||
Sbjct 10924347 ATCATAAATTATCGCAGAATTTA 10924325
Score = 82.4 bits (90), Expect = 9e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 47100 ATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCT 47159
||||||| ||| | || || |||||| ||||||||||| | ||| |||||||| | |
Sbjct 10926744 ATATGAACATTCATTGACTGTGACTGATCTATAAATGCACCACGATCTGCTGCCATTTTT 10926685
Query 47160 AAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAA 47199
|| || | | | |||||||| ||||| || ||||||||||
Sbjct 10926684 AAGATTATCTTCTGTGGTATTTCCCAAACGGTTTTATAAA 10926645
>seq15
Length=11467329
Score = 149 bits (164), Expect = 7e-31
Identities = 151/197 (77%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 19222 GTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATA 19281
|||||| | | ||||| ||| ||||| | | |||||||||||| || | |||||||||
Sbjct 5182330 GTATCTGTGATATATGTATCAATCAACATAGAGTACATTTCTGAGTGCACATTTTCTATG 5182271
Query 19282 GCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTT 19341
|| | ||||| || || ||||| | ||| || |||| |||||||| || ||||| |
Sbjct 5182270 GCGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCTTGACTAAATCGT 5182211
Query 19342 TCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTA 19401
||||| | || |||||||| ||||||||| ||| ||||| |||||||| |||||
Sbjct 5182210 TCGACGAGGTTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGAT 5182151
Query 19402 ATAAAATGTTTTTCATC 19418
|| |||||||| |||||
Sbjct 5182150 ATGAAATGTTTCTCATC 5182134
Score = 111 bits (122), Expect = 2e-19
Identities = 151/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834
||||||||| |||| |||||| || ||||||| |||||| ||| | |||
Sbjct 5183064 CCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATATTGACACATAAGTGTACAG 5183005
Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894
||||||||||| | || |||||||| || || || | |||||||||||| || || ||
Sbjct 5183004 TTCATTCCTATCATTTGAACAGGTAAAGCGTCCGTTAAAAATTCTTGTTCAATTTTGACA 5182945
Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAAC 18954
|| ||| ||||| || || | ||| | || | || || |||||| |||
Sbjct 5182944 GCATCTTTAATAATTGACGTGACCCGATCGCAAGACGGTTTTTGTACAATATGTTTGAAC 5182885
Query 18955 ATCAAACATGCAAAATCACAATGTAGTCCCT 18985
|| |||||||| ||||||||||||| |||||
Sbjct 5182884 ATTAAACATGCGAAATCACAATGTAATCCCT 5182854
Score = 104 bits (114), Expect = 3e-17
Identities = 99/127 (78%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507
||||||| | ||| ||||| || || |||||||| || || || |||||||||||||| |
Sbjct 5182034 CTTTAGAAAGATCCACTTCCTCGACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 5181975
Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAA 19567
||| || ||| | |||| |||||||| | |||||||||| | ||||||||| || |
Sbjct 5181974 GCCAAATGTCAGGCCATTGGATAGGAAAGACAACAAATCTACGTGGATTTTCTTTCAGTA 5181915
Query 19568 TAGGTTC 19574
|||||
Sbjct 5181914 ATGGTTC 5181908
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562069389146760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |