Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6 178 1e-39 seq15 149 7e-31 >seq6 Length=12724418 Score = 178 bits (196), Expect = 1e-39 Identities = 228/312 (73%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 48270 TTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329 || ||| ||||| ||||||| || | ||| || | ||||| |||||||||||||||||| Sbjct 10924965 TTACCAATATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAA 10924906 Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389 ||||| || | | | ||||||| |||||| ||||||||||| | ||||| || ||||| Sbjct 10924905 TATATAGCAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 10924846 Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449 || || ||||| | |||||| | | |||||| |||| |||| || || | || Sbjct 10924845 TTGTATACTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 10924786 Query 48450 CTTCCACTAGCTCTTATATTA-CTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 | || || |||| ||| | || | || | || |||||||| || ||| || Sbjct 10924785 GTGCCTCTTGCTCGAATACAATGTACATTAAGT-CCAATACCACCAGCTGATTTGCTAAT 10924727 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568 || ||||| | ||| | |||||||||||||| ||||| |||||||| |||| ||| Sbjct 10924726 AAGTGCACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAG 10924667 Query 48569 TAGAAAACAACT 48580 || ||||||||| Sbjct 10924666 TAAAAAACAACT 10924655 Score = 147 bits (162), Expect = 2e-30 Identities = 208/294 (71%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 47247 ttttctataattttgtttttta-attcatttgaccaaagttttcgttcagttaatgtttt 47305 ||| ||||||||| ||||| | |||| | |||||| | || |||||| | | Sbjct 10926369 TTTGCTATAATTTCATTTTTCATATTCTCATC-CCAAAGATCTCTTTCAGTCAGATCTCG 10926311 Query 47306 taaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATT 47365 ||| | ||||||||| || | |||||| |||||||| | ||||| | ||| ||||| Sbjct 10926310 TAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCATAAATATT 10926251 Query 47366 ACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGG 47425 ||| ||||||||||||||||||||||||||||| || ||||| ||||| || || || || Sbjct 10926250 ACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGACGCCGTTGG 10926191 Query 47426 CATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNG 47485 ||| | || | |||||| ||| || ||||||| ||| || | Sbjct 10926190 CATAGGGGCGATTAATAAAGAATTCCTAACTCCATGTTTAGCAATTTTTTCTTTCAGAAT 10926131 Query 47486 TTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539 | |||| | ||| | ||| | |||| ||||||||| | |||||||| | ||| Sbjct 10926130 TGTCCAGTTCCATAAATCAGTTGGAGTAACATTCCACATGTCATATTGTAAAAT 10926077 Score = 116 bits (128), Expect = 4e-21 Identities = 116/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 48916 CACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATA 48975 ||||||| |||| |||||||||||||||||||||||||| | ||||| |||||||||| Sbjct 10924126 CACTAAAACTTTTCTTTGTTTCTTTATGAAGATTAGATATTGCAATTCTTGCAGCTAATA 10924067 Query 48976 TAGCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATATCT 49034 | |||||||||||||| | || || ||| || | |||| ||||| | | ||| Sbjct 10924066 TCGCATAATCTGGATGTTTAGTAGT-CATAGTTGCGGCAGTTTCAGCTGCAAGATTGTCT 10924008 Query 49035 AATTCTTTAGTAGTTACACCTGTATATA 49062 ||||| ||| |||||||||| ||||| Sbjct 10924007 AATTCAACAGTGGTTACACCTGAATATA 10923980 Score = 109 bits (120), Expect = 6e-19 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924 |||||| |||| | ||| || || |||| ||| |||||||| | |||| |||| | | | Sbjct 10925558 ACAAACATATTCACTGCGATTGAAGCTAAATTGCATACAGCAATTTCATCTGGACTGGAA 10925499 Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT- 47983 ||||||| ||||| | ||||| ||||| | |||||| || || |||||||||||||| Sbjct 10925498 TATTGTACGATTTCTGTACATAAATTACTGCTTTTGATCGTCCCTAAATTTTGATGATTT 10925439 Query 47984 -ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAG 48042 ||| ||||| || || |||||||| |||| ||||| ||||| | |||| Sbjct 10925438 GATTTACG--ATTACAATGATCTTTATAAAGCATGTAAGGAGTTCCTGTTTCAACTTGAG 10925381 Query 48043 ATTCAATGATAGATTTCCA 48061 | || |||| | |||| Sbjct 10925380 AAATAAGAATAGCTGTCCA 10925362 Score = 104 bits (114), Expect = 3e-17 Identities = 181/263 (69%), Gaps = 8/263 (3%) Strand=Plus/Minus Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 |||||||||||| | || | ||| | | | ||| | || |||||||||||| |||| Sbjct 10924583 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 10924524 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC----CCATTGATG 48694 | |||||||| || || || ||||| ||| | ||| ||||| |||| |||| Sbjct 10924523 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGGATG 10924464 Query 48695 TATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTAT 48754 || | || | ||||||||| | ||| ||||||||||| | ||| | ||| Sbjct 10924463 GCAACT----GCAACTCTCATTAACATGTGTTGTGGTCTTTCAACTACTTTCCCTTGTAT 10924408 Query 48755 TTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTT 48814 ||| || | ||| | |||| | ||| || |||||||| || || || |||||| | Sbjct 10924407 TTTTAATAAATAACTTCTTTCAAGTGTCTTGAAACCAAAGTAATTATAACTAAAGTCTCT 10924348 Query 48815 ATCATTAATAATTGATGAATTTA 48837 ||||| ||| || | ||||||| Sbjct 10924347 ATCATAAATTATCGCAGAATTTA 10924325 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 47100 ATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCT 47159 ||||||| ||| | || || |||||| ||||||||||| | ||| |||||||| | | Sbjct 10926744 ATATGAACATTCATTGACTGTGACTGATCTATAAATGCACCACGATCTGCTGCCATTTTT 10926685 Query 47160 AAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAA 47199 || || | | | |||||||| ||||| || |||||||||| Sbjct 10926684 AAGATTATCTTCTGTGGTATTTCCCAAACGGTTTTATAAA 10926645 >seq15 Length=11467329 Score = 149 bits (164), Expect = 7e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 19222 GTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATA 19281 |||||| | | ||||| ||| ||||| | | |||||||||||| || | ||||||||| Sbjct 5182330 GTATCTGTGATATATGTATCAATCAACATAGAGTACATTTCTGAGTGCACATTTTCTATG 5182271 Query 19282 GCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTT 19341 || | ||||| || || ||||| | ||| || |||| |||||||| || ||||| | Sbjct 5182270 GCGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCTTGACTAAATCGT 5182211 Query 19342 TCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTA 19401 ||||| | || |||||||| ||||||||| ||| ||||| |||||||| ||||| Sbjct 5182210 TCGACGAGGTTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGAT 5182151 Query 19402 ATAAAATGTTTTTCATC 19418 || |||||||| ||||| Sbjct 5182150 ATGAAATGTTTCTCATC 5182134 Score = 111 bits (122), Expect = 2e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834 ||||||||| |||| |||||| || ||||||| |||||| ||| | ||| Sbjct 5183064 CCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATATTGACACATAAGTGTACAG 5183005 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||||||||| | || |||||||| || || || | |||||||||||| || || || Sbjct 5183004 TTCATTCCTATCATTTGAACAGGTAAAGCGTCCGTTAAAAATTCTTGTTCAATTTTGACA 5182945 Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAAC 18954 || ||| ||||| || || | ||| | || | || || |||||| ||| Sbjct 5182944 GCATCTTTAATAATTGACGTGACCCGATCGCAAGACGGTTTTTGTACAATATGTTTGAAC 5182885 Query 18955 ATCAAACATGCAAAATCACAATGTAGTCCCT 18985 || |||||||| ||||||||||||| ||||| Sbjct 5182884 ATTAAACATGCGAAATCACAATGTAATCCCT 5182854 Score = 104 bits (114), Expect = 3e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 ||||||| | ||| ||||| || || |||||||| || || || |||||||||||||| | Sbjct 5182034 CTTTAGAAAGATCCACTTCCTCGACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 5181975 Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAA 19567 ||| || ||| | |||| |||||||| | |||||||||| | ||||||||| || | Sbjct 5181974 GCCAAATGTCAGGCCATTGGATAGGAAAGACAACAAATCTACGTGGATTTTCTTTCAGTA 5181915 Query 19568 TAGGTTC 19574 ||||| Sbjct 5181914 ATGGTTC 5181908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562069389146760