Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq15 109 7e-19 >seq15 Length=11467329 Score = 109 bits (120), Expect = 7e-19 Identities = 166/233 (71%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 37195 AACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCttt 37254 ||||| |||||||| || | |||||| ||| || | |||||||||||||||||||| Sbjct 5182663 AACCT-CATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTT 5182605 Query 37255 ttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAA 37314 |||| | ||| || || || |||||| || ||||||||||||||| ||||| |||| Sbjct 5182604 TTTTCAGCCAGAAAATAGCAGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAA 5182545 Query 37315 ATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAAT 37374 |||| || | |||| | || || | ||| | || | ||||| ||| | ||||| Sbjct 5182544 ATGCAACCACACGTTCAGGAAATGTAGCACTCTCATGATTGATCCAATTTAACGCCCAAT 5182485 Query 37375 CTGCCTTTAATTTAACACAT--TCAATTGTTTCAATTGCTTTTAAGAGAAAGT 37425 || ||| ||| ||| | ||| ||||||| || || || | ||||| Sbjct 5182484 TAGCTTTTTTCGCAACGCATGGTAAAT--TTTCAATCGCATTGAACAAAAAGT 5182434 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 37438 TATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAG 37497 ||||||| ||||| |||||||| | | | |||||||| ||||| | |||||| || | Sbjct 5182329 TATCTGTGATATATGTATCAATCAACATAGAGTACATTTCTGAGTGCACATTTTCTATGG 5182270 Query 37498 CTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCT 37557 | | ||||||||||| ||||| | || || | || ||| || || | | ||| | | Sbjct 5182269 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCTTGACTAAATCGTT 5182210 Query 37558 TAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTA 37617 | | ||| |||||||| || |||||| ||| |||||||| || | |||| || Sbjct 5182209 CGACGAGGTTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATA 5182150 Query 37618 TAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGA 37669 | |||||| | |||||| | ||| | ||||| ||| ||||| | ||| Sbjct 5182149 TGAAATGTTTCTCATCACTATTTAAATGATTCCAGTCAAATATATCCTGTGA 5182098 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 36827 TTAAAAATCTTCATCTAAC-GTAAATTTTATTTCCTTATTACTATTCATAACTCCCATTT 36885 |||||| || ||| |||| ||||| || |||| ||| | ||| |||||| || Sbjct 5183307 TTAAAATTCAGCAT-TAACTGTAAAATTGCTTTCGACTTTATCTTGCATTACTCCCCATT 5183249 Query 36886 TTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTT 36945 ||||||| ||||| ||| |||||||||| || ||||| ||||||| || || | | Sbjct 5183248 TTTGATACTCTCCTACTTTCTTTTCGAAAAAGTTCGTCTTACCTTCTAAAGAGATGTGCT 5183189 Query 36946 CCATAAAATCAAATGGATT 36964 ||||||||||||||||||| Sbjct 5183188 CCATAAAATCAAATGGATT 5183170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592275271188360