Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq41 158 1e-33 seq1 154 1e-32 seq172 149 5e-31 seq14 104 2e-17 seq3430 82.4 6e-11 >seq41 Length=919255 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| | || | ||| | ||| ||||| ||||||||||||||||| | Sbjct 762308 CCACCTCGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAA 762367 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||||||| ||||| || || ||||| | |||||| || || ||| Sbjct 762368 AGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGA 762427 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || |||||||||||| ||| ||| | || | ||| ||||| | ||| ||| Sbjct 762428 ATTCCTTCCTTGTCTTGAATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACT 762487 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | ||||| || || | ||||||||||| || ||||| Sbjct 762488 TCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCAT 762534 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | ||| | ||| | |||||| || ||||| ||||| ||||| ||||| | Sbjct 762534 TTCCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCAG 762593 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || || | |||| |||| ||| ||||| ||||| ||||| | ||||| || || | Sbjct 762594 AGAGTGTACGTCCATCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGAG 762653 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || |||||||||||| ||| || | || | ||| || || | ||| | Sbjct 762654 GGATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAA 762713 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| | ||||| || || | || || || || || ||||| Sbjct 762714 CTTCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || ||||| ||||| ||||| ||||||| || || | | || || | ||| Sbjct 762787 ATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAGAGCGTACGTCCGTCTTCAAGTTG 762846 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| ||||| | |||||||| |||||||| ||||| || ||||||||||| Sbjct 762847 CTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTGTCTTGAATTTT 762906 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | ||| || | || | ||| || || | ||| |||||||| |||| ||||| || || Sbjct 762907 TGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGT 762966 Query 101446 TAAAGTTTTTACAAATATCTGCATGGTTA 101474 | || || || || ||||||||| ||| Sbjct 762967 CAGTGTCTTGACGAAGATCTGCATGATTA 762995 >seq1 Length=17153651 Score = 154 bits (170), Expect = 1e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || |||||||| ||||| ||||| || || || ||||| | | |||||| |||| Sbjct 7345275 AACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCGAAAGAGTTCTTCCATCT 7345216 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || | ||| || || ||||| ||||||||||| || || || ||||| || ||||| ||| Sbjct 7345215 TCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCT 7345156 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || ||| ||| ||| | |||| |||||||| | ||| ||||||||||| | ||| Sbjct 7345155 TGGATCTTTGCTTTAACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTT 7345096 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || ||||| ||||| || || ||||||||| Sbjct 7345095 TTCCCTGTTAAGGTTTTAACGAAGATCTGCATG 7345063 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || |||||||| || || || ||||| || || || ||||| | | |||||| |||| Sbjct 7345503 AACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATCT 7345444 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || | ||| || || ||||| ||||||||||| || || || ||||| || ||||| || Sbjct 7345443 TCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTTTCA 7345384 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || ||| ||| | |||| ||||| | || ||||| | || | | | Sbjct 7345383 TGGATCTTAGCTTTCACATTCTCTATTGTGTCGGGAACATCAACTTCCAAGGTAATGGCT 7345324 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481 || || || | ||||| ||| | |||||||| | ||||||| Sbjct 7345323 TTACCAGTAAGCGTTTTAACAGAGATCTGCATTCCTCCGCGAAG 7345280 >seq172 Length=1724251 Score = 149 bits (164), Expect = 5e-31 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 101280 CTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATA 101339 ||||||| ||||| ||||| | | ||| | |||| ||||||||||| || ||||| | Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1092351 Query 101340 TCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTT 101399 | | ||| || ||||| || ||||| ||||| || || || ||||| ||||||| ||| Sbjct 1092350 TAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTT 1092291 Query 101400 CTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAA 101459 | | ||| || || | ||| |||||||| |||| ||||| || || |||||||| |||| Sbjct 1092290 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1092231 Query 101460 ATATCTGCAT 101469 |||||||||| Sbjct 1092230 ATATCTGCAT 1092221 >seq14 Length=11649563 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 101366 CCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCA 101425 ||||||||||| ||||||||| ||| ||| |||| | ||| || || | || || ||| Sbjct 1883446 CCTTCTTTATCCTGAATTTTTGCTTTAACATTTTCGATAGTATCTGATGCCTCGACCTCA 1883387 Query 101426 AGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 ||||||| || ||||| |||||||| || ||||||||||||||||| Sbjct 1883386 AGAGTGATAGTCTTGCCTGTTAAAGTCTTCACAAATATCTGCATGGT 1883340 Score = 98.7 bits (108), Expect = 8e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||| ||||||||||||| |||||||| | |||||||| || || ||||| ||||| | Sbjct 1883927 TCCACCTCTTAAACGTAGCACTAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGA 1883868 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | |||||| |||| || ||||| || || ||||| || || | |||||||| || || Sbjct 1883867 TAAAGTTCTACCATCCTCTAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGG 1883808 Query 101362 AATGCCT 101368 ||| ||| Sbjct 1883807 AATTCCT 1883801 >seq3430 Length=546 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 101366 CCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCA 101425 || ||||| ||||| || || ||| ||| | |||| || ||||| | ||| |||||| Sbjct 545 CCCTCTTTGTCTTGGATCTTAGCTTTCACATTCTCTATTGTATCAGAAGCTTCTACTTCA 486 Query 101426 AGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| | ||||| || ||||| ||||| ||||| ||||||||| Sbjct 485 AGAGTAATAGTTTTTCCTGTTAATGTTTTAACAAAGATCTGCATG 441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396251310532413