Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq172 113 3e-20 seq41 96.9 3e-15 >seq172 Length=1724251 Score = 113 bits (124), Expect = 3e-20 Identities = 145/199 (73%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 ||||||||||||| ||||| || ||| | || | || ||||| ||||| || ||||| | Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1092351 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | || || || ||||| | |||| || |||||||| || || ||||||| Sbjct 1092350 TAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTT 1092291 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | || ||||| || || || || | || || ||||| || ||||||||||| |||| Sbjct 1092290 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1092231 Query 48757 AAATCTGCATCGT-GTGTA 48774 | ||||||||| | ||||| Sbjct 1092230 ATATCTGCATCTTGGTGTA 1092212 >seq41 Length=919255 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| |||||||||||||| || | || | || ||||| || ||||| || || Sbjct 762344 TCCTTTTGTATATTGTAATCAGAAAGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAG 762403 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| | |||||| || | |||| || |||||||| ||| ||| ||| ||| Sbjct 762404 ATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGAATTTTTGCTTTCACATTC 762463 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || || || || || | || || |||||||| || | ||||||||| Sbjct 762464 TCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACA 762523 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 762524 AAAATTTGCAT 762534 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||||||||| ||||| || || | || |||| || | ||||| || ||||| Sbjct 762800 TCCTTTTGAATATTATAATCGGAGAGCGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAG 762859 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| | |||||||||| |||| || |||||||| ||| ||| ||| || Sbjct 762860 ATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTC 762919 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || || || || || | || || |||||||| |||| || || || Sbjct 762920 TCAATAGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGTCAGTGTCTTGACG 762979 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 762980 AAGATCTGCAT 762990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380911559224707