Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq172 91.5 1e-13 seq1 91.5 1e-13 seq41 82.4 6e-11 >seq172 Length=1724251 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || ||||| |||||||| ||||| || || ||||||||||| ||| ||| ||| | Sbjct 1092218 AAGATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCA 1092277 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 ||||| || | | || | || |||||| ||||| || ||| | || ||| Sbjct 1092278 TCAGATACTATTGAAAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATTCCACCTGAT 1092337 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 || || | ||||| ||||| || || |||||||||||| ||| || | |||||| Sbjct 1092338 CAGCAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTAT 1092397 Query 28731 AACATTCAAAAAG 28743 || |||||||||| Sbjct 1092398 AATATTCAAAAAG 1092410 >seq1 Length=17153651 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || ||||| || || || ||||| ||||| || ||||| ||||| ||| ||| || Sbjct 7345061 AACATGCAGATCTTCGTTAAAACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAGCT 7345120 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | || | || ||| ||| ||||||||||| | || ||| Sbjct 7345121 TCTGACACAATAGAGAATGTTAAAGCAAAGATCCAAGACAAAGAGGGTATTCCTCCAGAC 7345180 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 || ||| | | |||||||| ||||||||| | |||||| | |||| | | |||||| Sbjct 7345181 CAGCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCGGATTAT 7345240 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || ||||| ||||| || | || || ||| | || ||||| || Sbjct 7345241 AACATCCAGAAAGAGTCTACAAGCCATTTAGTGTTGAGACTTCGCGGAGGAAT 7345293 >seq41 Length=919255 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||||||||| | || || ||||| || || ||| ||| |||| Sbjct 762535 AATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACAATAACTCTTGAAGTTGAAGCTTC 762476 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || | || ||||||| || ||||| || ||| | || ||| | Sbjct 762475 TGATACTATTGAGAATGTGAAAGCAAAAATTCAA-GACAAGGAAGGAATTCCTCCAGACC 762417 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTA 28729 ||||||| | ||||| || || ||||||||||||||| | | ||| | | ||||| Sbjct 762416 AACAGAGGTTGATCTTCGCTGGTAAACAATTGGAAGATGGGCGCACACTTT--CTGATTA 762359 Query 28730 TAACATTCAAAAAGAATCTACTCTGCA 28756 || || ||||| ||||| || |||| Sbjct 762358 CAATATACAAAAGGAATCAACCTTGCA 762332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425375719460811