Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq6 147 1e-30 >seq6 Length=12724418 Score = 147 bits (162), Expect = 1e-30 Identities = 213/301 (71%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 25999 ATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGC 26058 ||||||||| |||||||| || ||||| ||||||| ||||||||||||||||| ||||| Sbjct 10924957 ATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAGC 10924898 Query 26059 AAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAAC 26118 ||| ||| |||||| ||| |||||||| || |||| || || | |||| | || Sbjct 10924897 AAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATAC 10924838 Query 26119 TTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGT 26178 | | | |||||||| ||| ||| | || | || ||| | | || | ||| | Sbjct 10924837 TCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGGTGTGCCTCT 10924778 Query 26179 CGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA 26238 | || |||| || ||| || || || |||||||| |||| |||| |||||| Sbjct 10924777 TGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCTGATTTGCTAATAAGTGCACA 10924718 Query 26239 ATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACA 26298 | | |||||| ||||||| | |||||||||| | ||||| || ||||||||| Sbjct 10924717 TCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAAAAACA 10924658 Query 26299 A 26299 | Sbjct 10924657 A 10924657 Score = 111 bits (122), Expect = 8e-20 Identities = 160/220 (73%), Gaps = 12/220 (5%) Strand=Plus/Minus Query 24951 TCATATTCGGTGTCCAAAGATTAATTTTTTCA---AGATCTC-TAATCAAGTGTTTATTT 25006 |||||||| |||||||| | ||||| ||||||| |||| || || |||| Sbjct 10926350 TCATATTCTCATCCCAAAGATC---TCTTTCAGTCAGATCTCGTAATAAA-TGAGGATTT 10926295 Query 25007 ATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAA--GTGAATGGTT 25064 | || ||| ||||||||||||||||||||| |||| | | | || |||||| Sbjct 10926294 ACGACTTGAAACTCTCCAGACAAAACTCTTCTTGC--ATAAATATTACTGGTATATGGTT 10926237 Query 25065 CAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTA 25124 | | | |||||||||||||||||||||| | |||||| || |||||||| || |||| Sbjct 10926236 CTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGACGCCGTTGGCATAGGGGCGATTA 10926177 Query 25125 ATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTT 25164 ||| ||||| || | |||| |||| |||| | || ||| Sbjct 10926176 ATAAAGAATTCCTAACTCCATGTTTAGCAATTTTTTCTTT 10926137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253022702264675