Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq16 120 4e-22 >seq16 Length=5274633 Score = 120 bits (132), Expect = 4e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||||||||| ||||| |||||||| || || || ||||||||||| || ||| Sbjct 3661618 ACTCCAATAGGACCACTTCCAGGTCCTCCACCGCCGTGAGGTATACAGAATGTTTTGTGT 3661677 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 ||||||||||| | || || ||||| |||| || |||||| || || ||| Sbjct 3661678 AAATTTAGATGCGAAACGTCACTGCCATAATCACCAGGACGACATAGACCAACTTGAGCA 3661737 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || ||||| || ||||| || ||||| ||| |||||||| || | ||| || Sbjct 3661738 TTCATGTTAGCACCGTCTAGATACACTTGACCTCCAGCTTCATGAACCATATCACAAATA 3661797 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGA 138421 | || | | ||||| || || | ||||| |||||||| ||||| | ||| || Sbjct 3661798 TCAGCGACGGTCTCCTCAAACACGCCGTTCGTCGACGGATATGTTATCATCAGACAAGA 3661856 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 139259 TAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTG 139318 || ||| || | ||||| || | ||||| | ||||||||||||| || |||||||| Sbjct 3662857 TATTCCTTCAGGTCCATGGTACACAGCATACATCGCAGACATATTTGCCAGTAGTGCTTG 3662916 Query 139319 TGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAG 139378 ||| || || ||||| || || ||||| ||||||||||||||||| || | ||||| || Sbjct 3662917 TGCAGTACAAATGTTGCTAGTAGCTTTATCTCTTCTAATATGCTGTTCGCGTGTTTGAAG 3662976 Query 139379 TGCTA 139383 |||| Sbjct 3662977 GGCTA 3662981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578957804974680