Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq9 515 5e-141 seq41 185 1e-41 seq172 159 5e-34 seq3 150 2e-31 seq7 140 4e-28 seq1 123 3e-23 >seq9 Length=15655298 Score = 515 bits (570), Expect = 5e-141 Identities = 881/1259 (70%), Gaps = 18/1259 (1%) Strand=Plus/Minus Query 195611 GGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTTGATTAAGATGAA 195669 || |||| ||| | ||| |||| |||||| | || ||||| || | |||||||| Sbjct 1035183 GGAGAGACGAAG-ACTTTCTTCCCTGAAGAAGTGAGTTCAATGGTCCTGGTAAAGATGAA 1035125 Query 195670 GGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGC 195729 || ||||| ||| | | | | || || | ||| | |||| || | ||||||||||| Sbjct 1035124 AGAAACTGCTGAAGCATACCTTGGCAAGAGTGTCAGCAATGCCGTGATCACTGTACCTGC 1035065 Query 195730 TTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAA 195789 |||||||| || || || || ||||| || |||||||||| | ||| ||||| | || Sbjct 1035064 TTACTTCAACGACTCGCAGCGTCAGGCAACCAAGGACGCTGGCACCATTTCGGGTTTGAA 1035005 Query 195790 CTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGA 195848 ||||||| | || ||||| ||||| || || || || |||||||| || |||| || | Sbjct 1035004 -TGTCTTACGTATCATCAACGAACCCACCGCTGCCGCCATTGCTTACGGCTTGGATAAAA 1034946 Query 195849 ACAAGGACGAA-GATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTC 195907 | || || | || || || | |||||||| || |||||||| || ||||||||| Sbjct 1034945 A-AACTACCACCGAGCGCAACGTCCTAATCTTTGACCTTGGTGGTGGCACCTTTGATGTC 1034887 Query 195908 TCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCAT 195967 ||| || | | || |||| ||| || || || || ||| | || || || || |||||| Sbjct 1034886 TCAATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTCAACAGCAGGAGACACTCAT 1034827 Query 195968 CTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTCCGTCG 196026 || || || ||||||||||| ||| | || ||| |||||| | || ||| || Sbjct 1034826 CTTGGCGGCGAAGATTTCGACAATCGTATGGTCAATCACTTTGTCCAA-GAATTCAAACG 1034768 Query 196027 AAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATG 196086 || | ||||||||| | ||| |||| | || |||||||| | || || || || Sbjct 1034767 CAAATACAAGAAAGATCTGACTGCAAATAAACGCGCCCTTCGTCGTTTGAGAACAGCTTG 1034708 Query 196087 TGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTT 196146 |||||||| ||||| ||| | ||||| | ||||| | | | || ||||||||| | Sbjct 1034707 CGAACGTGCGAAACGCACTTTGTCTTCGTCTACTCAAGCTAGTATCGAAATTGATTCGCT 1034648 Query 196147 GTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTC 196206 | ||| ||||||||||| ||||| | || ||| | || || || |||||| | | Sbjct 1034647 CTATGAGGGAATTGACTTTTATACCTCAATCACCAGAGCTCGATTCGAAGAGCTTTGTGC 1034588 Query 196207 TGATTTGTTTAGGAAGTGTA-TGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGG 196265 |||| | ||||| | | | | || || || ||| || | || || || || |||| Sbjct 1034587 TGATCTCTTTAG-AGGAACACTCGAGCCAGTGGAAAAATCGTTGCGCGATGCCAAAATGG 1034529 Query 196266 ATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTC 196325 |||| || || || | || || || | || || ||||| || |||||||| ||||| | Sbjct 1034528 ATAAAGCTCAGATTCACGATATCGTTTTAGTTGGTGGATCCACGCGTATTCCTAAGATCC 1034469 Query 196326 AACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATG 196385 || || | || |||||| ||| || || || ||||| | |||||||| |||| Sbjct 1034468 AAAAGTTACTGCAGGACTTCTTTAATGGGAAGGAATTGAACAAGTCTATCAACCCTGATG 1034409 Query 196386 AAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAA---TA 196442 |||| || |||||||| || || || || ||||||||||| || || |||||| | Sbjct 1034408 AAGCTGTAGCTTATGGAGCTGCTGTACAAGCTGCTATTCTA-CA--TGGTGACAAGTCTG 1034352 Query 196443 ATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAG 196502 | | || |||||||| ||||| |||||||| |||| | || || ||| ||||||| | Sbjct 1034351 AAGAAGTACAAGATCTACTGCTTCTTGATGTAACACCTTTGTCTCTTGGTATTGAAACTG 1034292 Query 196503 CGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAAC 196562 | ||||||||||||||| |||| | || || || |||||||| || || || | Sbjct 1034291 CTGGTGGTGTTATGACTGCTCTTATCAAGAGAAATACTACTATTCCAACAAAACAGACTC 1034232 Query 196563 AAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAG 196622 || ||| | || ||| | |||||||||||||| || |||||||| |||||||| | Sbjct 1034231 AAACCTTCACTACATATGCTGATAATCAACCAGGAGTATTGATTCAAGTTTATGAAGGTG 1034172 Query 196623 AACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCA 196681 |||| | | || ||||||||||| | || | || | || || | | || |||||| Sbjct 1034171 AACG-TGCTATGACAAAGGATAACAACTTATTAGGTAAATTTGAGCTCAGTGGTATTCCA 1034113 Query 196682 GCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATT 196741 | || || |||| ||||| |||||| | || || || || || || ||||| ||| Sbjct 1034112 CCAGCCCCTCGAGGAGTTCCTCAGATTGAAGTCACATTTGACATTGATGCCAATGGTATT 1034053 Query 196742 CTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAAT 196801 || || ||| | || | ||| || || |||| ||| | || ||| ||||||||| Sbjct 1034052 CTGAATGTCTCTGCAGTGGATAAATCTACTGGGAAAGAGAACAAAATTACCATTACCAAT 1033993 Query 196802 GACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTA 196860 ||||| || || ||| || || || |||||| | ||||| | || || ||||| || Sbjct 1033992 GACAAAGGTCGTCTTAGCAAAGAAGACATTGAAAGAATGGTCAATGAAGCTGAAAAATA 1033934 >seq41 Length=919255 Score = 185 bits (204), Expect = 1e-41 Identities = 171/217 (79%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||| || || || |||||||| || |||||||| || || || ||||| Sbjct 762767 GTGGTATGCAAATTTTCGTCAAGACCCTTACAGGGAAAACTATAACTCTTGAAGTTGAAG 762708 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || || || || || ||| | ||||| || |||||||| |||||||| || || || | Sbjct 762707 CTTCCGATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAG 762648 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | || ||| | | || |||||||||||||| || |||||||||||||| ||| |||||| Sbjct 762647 ACCAACAAAGGTTGATCTTTGCTGGTAAACAACTGGAAGATGGACGTACACTCTCTGATT 762588 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||||| || ||||| || |||||||| Sbjct 762587 ATAATATTCAAAAGGAATCGACTCTTCATCTTGTTCT 762551 Score = 181 bits (200), Expect = 1e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || || || || |||||||||||||| || || ||||| | || Sbjct 762990 ATGCAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 762931 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || ||| | ||||| || |||||||| |||||||| ||||| || ||||| Sbjct 762930 GATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCGCCGGATCAA 762871 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 ||| | | || |||||||| || || |||||||| |||||||| ||| | ||||| || Sbjct 762870 CAAAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACGCTCTCCGATTATAAT 762811 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 |||||||||| || ||||| || ||||| || | ||||| |||||| Sbjct 762810 ATTCAAAAGGAATCGACTCTTCATCTTGTCCTTCGCCTTCGTGGTGGT 762763 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| ||||||||||| |||||||| || || || || ||||| | || Sbjct 762534 ATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACAATAACTCTTGAAGTTGAAGCTTCT 762475 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | ||||| || |||||||| |||||||| ||||| || || || Sbjct 762474 GATACTATTGAGAATGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCAA 762415 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | | || || ||||||||||| | |||||||| || || || |||||||||| Sbjct 762414 CAGAGGTTGATCTTCGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTACAAT 762355 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | |||||||| || || | || ||||| || | ||||| ||||| Sbjct 762354 ATACAAAAGGAATCAACCTTGCATCTTGTGCTTCGTCTTCGAGGTGG 762308 >seq172 Length=1724251 Score = 159 bits (176), Expect = 5e-34 Identities = 148/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | ||||| ||||| |||||||| || || || | ||| Sbjct 1092221 ATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCATCA 1092280 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | ||||| || || || || |||||||| |||||||| |||||| Sbjct 1092281 GATACTATTGAAAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATTCCACCTGATCAG 1092340 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 ||||| |||||||||||||| || || | |||||||||||||| || | ||||| || Sbjct 1092341 CAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTATAAT 1092400 Query 172042 GTTCAAAA 172049 ||||||| Sbjct 1092401 ATTCAAAA 1092408 >seq3 Length=14656165 Score = 150 bits (166), Expect = 2e-31 Identities = 226/316 (72%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 196544 ATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCAT 196603 |||||||| ||||| ||| |||| || || || |||||||||| || | Sbjct 1112185 ATTCCGACCAAGAAATCGCAAATCTTCTCTACTGCGTCTGATAATCAACATACAGTAACT 1112126 Query 196604 ATTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTT 196662 || |||||||| ||||| ||||| ||| || |||| || |||||||| || || | || Sbjct 1112125 ATCCAAGTATACGAAGGTGAACG-TCCAATGACAAAAGACAACCATCTTCTGGGTAAATT 1112067 Query 196663 CGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGA 196722 |||| | || || || ||| | ||||| |||||| | ||||| ||| | ||| ||| || Sbjct 1112066 CGATCTTACTGGCATCCCACCAGCACCAAGAGGTATACCACAAATTGAAGTTACCTTTGA 1112007 Query 196723 TATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTG- 196781 || || || ||||| ||| || | || | ||||||||||||| |||| ||||| | Sbjct 1112006 AATCGATGCTAATGGTATTTTACAAGTATCTGCTGAGGACAAGGGAACTGG-AAATCGGG 1111948 Query 196782 AAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGG 196841 |||||||||| |||||||||||| | || ||| || || || || ||| | ||| Sbjct 1111947 AAAAGATTGTTATTACCAATGACCAAAATCGTCTTACTCCCGATGACATAGAAAGGATGA 1111888 Query 196842 TTCAAGATGCGGAAAA 196857 | | ||||| || || Sbjct 1111887 TAAAGGATGCCGAGAA 1111872 Score = 114 bits (126), Expect = 2e-20 Identities = 171/242 (71%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 195753 AGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAAC 195812 |||| || || || || | | ||||| | || || | | | ||||| |||||||||| Sbjct 1113164 AGGCTACTAAAGATGCAGGTACTATTTCTGGACTTGTCGTTATGAGAATCATCAATGAAC 1113105 Query 195813 CAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTAT 195872 | ||||| |||||||||||||||||| |||| ||| || || | ||| || || || | Sbjct 1113104 CTACAGCTGCTGCAATTGCTTATGGTTTGGATAAG---AAAGATGGAGAAAAGAACGTGT 1113048 Query 195873 TGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTA 195932 | | ||||| | ||||||||||| ||||||||| | || | ||||| ||| Sbjct 1113047 TAGTTTTTGACTTGGGTGGTGGTACCTTTGATGTCAGTTTGCTTACAATTGATAATGGAG 1112988 Query 195933 TATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCAC 195992 | || || || || || ||||| |||||| |||||||||| || || ||| || Sbjct 1112987 TGTTTGAGGTTGTTGCAACAAACGGTGACACTCATTTAGGTGGTGAGGACTTTGATCAAC 1112928 Query 195993 GT 195994 || Sbjct 1112927 GT 1112926 >seq7 Length=18145390 Score = 140 bits (154), Expect = 4e-28 Identities = 224/317 (71%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 195631 TCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCAT 195690 ||||||||| || ||||| ||||| |||| || |||||||| || |||||| ||| | Sbjct 10092899 TCCCGAAGAGATCTCGTCGATGGTTTTGACGAAAATGAAGGAAACGGCGGAAGCTTATTT 10092840 Query 195691 GGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACG 195750 || || | || | | || || | || ||||| || ||||||| ||||| || || Sbjct 10092839 AGGAAAGTCCGTCACGAACGCCGTGATTACGGTACCAGCGTACTTCAACGATTCCCAGCG 10092780 Query 195751 ACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTT-AGAATTATCAATG 195809 |||||| || |||||||| | | |||| | || | || |||| | || || || || | Sbjct 10092779 ACAGGCTACCAAGGACGCCGGTACTATCTCCGGCTTGAA-TGTCCTGAGGATCATTAACG 10092721 Query 195810 AACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA--AA 195867 | || || || || || |||||||| || || ||||| || || || | ||| || Sbjct 10092720 AGCCGACTGCCGCAGCTATTGCTTACGGCCTCGACAAAAAG--GGCCGCGGTGAAAGGAA 10092663 Query 195868 TGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGG 195927 || ||||||| |||||||| || ||||| || || || || | || | ||| | | Sbjct 10092662 CGTTCTGATCTTCGATCTCGGCGGCGGTACTTTCGACGTATCGATACTGACTATCAACGA 10092603 Query 195928 TGGTATATTCGAAGTAA 195944 || ||||||||||||| Sbjct 10092602 CGGCATATTCGAAGTAA 10092586 >seq1 Length=17153651 Score = 123 bits (136), Expect = 3e-23 Identities = 155/209 (74%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 || ||||||||||| ||||| ||||| | | ||| | | || ||| |||| || | Sbjct 8553204 ATAAAGATGAAGGAAACTGCAGAATCGTATTTAAGTACACCAGTAAAAAATGCTGTAATT 8553263 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| ||||| || |||| |||||| ||| |||| || || ||||| |||| | ||| Sbjct 8553264 ACTGTTCCTGCATATTTCAATGATTCCCAAAGACAAGCTACCAAGGATGCTGGTCAAATT 8553323 Query 195779 GCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 |||| || || ||| ||||| | || |||||||||||||| ||||| |||| ||||| Sbjct 8553324 TCGGGGCTTAA-TGTACTTAGGGTAATTAATGAACCAACAGCAGCTGCCCTTGCATATGG 8553382 Query 195838 TCTGGACAAGAACAAGGACGAAGATAAAA 195866 |||| || |||| |||||||||| Sbjct 8553383 CATGGATAA-AACA-----GAAGATAAAA 8553405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657816275622480