Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq41 158 2e-33 seq14 114 2e-20 seq10 93.3 8e-14 >seq41 Length=919255 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||| | ||||| || |||||||| || | || || ||||| || || || Sbjct 762308 CCACCTCGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAA 762367 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | ||| || |||||||| || || || || || |||||||| || ||||| Sbjct 762368 AGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGA 762427 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||| || ||||| ||||| | ||| | ||| ||||||||| |||| |||||| Sbjct 762428 ATTCCTTCCTTGTCTTGAATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACT 762487 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 762488 TCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCAT 762534 Score = 152 bits (168), Expect = 9e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || ||||||| ||||| || ||||| | || | || || |||||| Sbjct 762526 AATTTGCATTCCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATT 762585 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || || | || | ||| || | |||||| || ||||| || || || ||||| Sbjct 762586 ATAATCAGAGAGTGTACGTCCATCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTG 762645 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| |||||||| || ||||| ||||| | ||| | || |||||||||||| Sbjct 762646 GTCTGGAGGGATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGA 762705 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||| |||||||||||||| ||||| || || || || || |||||||| Sbjct 762706 AGCTTCAACTTCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 Score = 140 bits (154), Expect = 6e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | ||||| || ||||| | || | || || |||||| Sbjct 762754 AATTTGCATACCACCACGAAGGCGAAGGACAAGATGAAGAGTCGATTCCTTTTGAATATT 762813 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| ||||| | ||| | || || | ||| ||||| ||||| || || || ||||| Sbjct 762814 ATAATCGGAGAGCGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGTTG 762873 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || |||||||| || ||||| ||||| | ||| | || |||||||||||| Sbjct 762874 ATCCGGCGGAATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGA 762933 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||| || || |||||||| ||||| || || || || || || ||||| Sbjct 762934 AGCTTCAACTTCAAGTGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCAT 762990 >seq14 Length=11649563 Score = 114 bits (126), Expect = 2e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 |||||||| || || || || | ||| ||||||| || || ||||||||| || ||| Sbjct 1883926 CCACCTCTTAAACGTAGCACTAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGAT 1883867 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || |||||| ||| |||||||||||||| ||||| |||||||| |||||||| || || Sbjct 1883866 AAAGTTCTACCATCCTCTAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGA 1883807 Query 193254 ATTCCT 193259 |||||| Sbjct 1883806 ATTCCT 1883801 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 ||||||||||| || ||||| | ||| | |||| |||||||| || | ||| || || Sbjct 1883446 CCTTCTTTATCCTGAATTTTTGCTTTAACATTTTCGATAGTATCTGATGCCTCGACCTCA 1883387 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || ||||||| || || |||||||| ||||| Sbjct 1883386 AGAGTGATAGTCTTGCCTGTTAAAGTCTTCACAAATATCTGCAT 1883343 >seq10 Length=13618662 Score = 93.3 bits (102), Expect = 8e-14 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 38300 ACATATCCCATCGGATCACAACCGTCaaaaaaaTATTTATCGTTTAAATATATAGCTTTA 38359 ||||| || ||||||||||||| || | | || |||| |||||||| | || Sbjct 10007327 ACATAACCATTCGGATCACAACCATCGATACTGTACTTATTATTTAAATAATTGGCCCAT 10007268 Query 38360 TCTATGGCTTCTTGAGGTGTTTTTGTCCATTCTATTAATTTTTTAGCCCAAAACATTCTC 38419 |||| || | |||||||| |||||||||| ||||||||| |||||| ||||||| Sbjct 10007267 TCTAAAGCAATCTCAGGTGTTTCAGTCCATTCTAATAATTTTTTTGCCCAATACATTCTT 10007208 Query 38420 ATGTAACCATTAATATATCCAAACTTTAATAAATAATCTTGACAATAATTCCAAAATTTA 38479 | | | |||| || | ||| ||| | | || |||||| |||||| || | | Sbjct 10007207 AAGAATCCATGCATTTTTCCTGTTATTATCATTTGATTTTGACATGCATTCCATAAATCA 10007148 Query 38480 TTATCTGTTTTAGAATATTCTAATTCGTCTAAATTAAAATGTTTA-TCTCTTTTATCATT 38538 | || ||||||||| | ||| || | | || || || || | || | |||| |||| || Sbjct 10007147 TCATGTGTTTTAGAGTTTTCCAACT-GACTTAAAGAATATATATATTTTCTTGTATCCTT 10007089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899591322980880