Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq41 129 9e-25 seq172 116 5e-21 seq1 116 5e-21 seq15 104 3e-17 seq3430 86.0 9e-12 seq14 86.0 9e-12 >seq41 Length=919255 Score = 129 bits (142), Expect = 9e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | || || |||||||| || | ||||| |||| ||| Sbjct 762762 ATGCAAATTTTCGTCAAGACCCTTACAGGGAAAACTATAACTCTTGAAGTTGAAGCTTCC 762703 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||||||| ||||| ||||| || ||||| || |||||||| ||| Sbjct 762702 GATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCAA 762643 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| ||||| | ||| ||||| || || |||||| | || | || ||||||||| Sbjct 762642 CAAAGGTTGATCTTTGCTGGTAAACAACTGGAAGATGGACGTACACTCTCTGATTATAAT 762583 Query 156003 ATATCCAAA-GAGGCGACGCTTCAT 156026 || || ||| || |||| |||||| Sbjct 762582 AT-TCAAAAGGAATCGACTCTTCAT 762559 Score = 129 bits (142), Expect = 9e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || ||| |||| ||||||||||| ||| | ||||| |||| ||| Sbjct 762990 ATGCAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 762931 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||||||| ||||| ||||| || ||||| || || || || ||| Sbjct 762930 GATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCGCCGGATCAA 762871 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| ||||| | ||| || ||||| || ||||| | || | || ||||||||| Sbjct 762870 CAAAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACGCTCTCCGATTATAAT 762811 Query 156003 ATATCCAAA-GAGGCGACGCTTCAT 156026 || || ||| || |||| |||||| Sbjct 762810 AT-TCAAAAGGAATCGACTCTTCAT 762787 >seq172 Length=1724251 Score = 116 bits (128), Expect = 5e-21 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 155794 TTGTTTATAATAAAAATTTATGTAAT--AAAATGCAAATATTTATTAAAACATTGACTGG 155851 || |||||| |||||| || || || ||||| |||||| | ||||| |||||||| Sbjct 1092190 TTTTTTATACTAAAAAAGTAGATACACCAAGATGCAGATATTTGTGAAAACTTTGACTGG 1092249 Query 155852 AAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAAT 155911 ||||| || || | ||||| |||| || |||| |||| ||| || ||| |||||| Sbjct 1092250 TAAAACCATCACCCTTGAAGTAGAAGCATCAGATACTATTGAAAATGTAAAAGCTAAAAT 1092309 Query 155912 ACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCT 155971 || || || ||||| || || || || || ||| | | |||| ||| || ||||| | Sbjct 1092310 CCAGGACAAGGAAGGAATTCCACCTGATCAGCAACGTCTTATTTTTGCTGGAAAGCAATT 1092369 Query 155972 CGAAGATACCAGAACTTTATCAGATTATAATAT 156004 |||||| | ||| | |||||||||||||| Sbjct 1092370 GGAAGATGGACGTACTCTGTCAGATTATAATAT 1092402 >seq1 Length=17153651 Score = 116 bits (128), Expect = 5e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || ||||||| || || || ||||||||||| | ||||| |||| | Sbjct 7345061 AACATGCAGATCTTCGTTAAAACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAGCT 7345120 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | || || || ||| || || ||||| ||||| || || |||||||| Sbjct 7345121 TCTGACACAATAGAGAATGTTAAAGCAAAGATCCAAGACAAAGAGGGTATTCCTCCAGAC 7345180 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || | ||||| | ||| || || || || |||||| |||||| | || |||||| Sbjct 7345181 CAGCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCGGATTAT 7345240 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038 || || |||||| | || ||||||||||| ||| Sbjct 7345241 AACATCCAGAAAGAGTCTACAAGCCATTTAGTGTTGAGA 7345279 Score = 116 bits (128), Expect = 5e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || | | ||||||| | ||||| ||| | ||||| || ||||| || | | | Sbjct 7345291 AATGCAGATCTCTGTTAAAACGCTTACTGGTAAAGCCATTACCTTGGAAGTTGATGTTCC 7345350 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || |||||| ||| || || || ||||| || || |||||||| || Sbjct 7345351 CGACACAATAGAGAATGTGAAAGCTAAGATCCATGAAAAAGAGGGTATTCCTCCAGACCA 7345410 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||| | ||| || || || || |||||| |||||| | ||||||||||| Sbjct 7345411 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7345470 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038 || |||||| | || || ||||||||||| ||| Sbjct 7345471 CATCCAGAAAGAGTCCACACTCCATTTAGTGTTGAGA 7345507 >seq15 Length=11467329 Score = 104 bits (114), Expect = 3e-17 Identities = 170/244 (70%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 18413 TCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTT 18472 ||||||| |||| | ||||| || || || |||| ||| |||||||| || || | || Sbjct 5182336 TCTTTGGTATCTGTGATATATGTATCAATCAACATAGAGTACATTTCTGAGTGCACATTT 5182277 Query 18473 TCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAA 18532 || || || | ||||||| ||| || | | ||||||| ||| | || | | Sbjct 5182276 TCTATGGCGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCTTGACTA 5182217 Query 18533 AATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACA 18592 |||| ||| || | ||||||||||| || || |||| || || || ||||| || ||| Sbjct 5182216 AATCGTTCGACGAGGTTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACA 5182157 Query 18593 TATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTTGAT 18652 | ||||||||||| |||| | || | || ||||| ||| |||||| | ||| Sbjct 5182156 TGAGATATGAAATGTTTCTCATCACTATTTAAATGATTCCAGTCAAATATATCCTGTGA- 5182098 Query 18653 AGAT 18656 |||| Sbjct 5182097 AGAT 5182094 >seq3430 Length=546 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| |||||||||| || |||||||||||||| | ||||| |||| | Sbjct 439 AACATGCAGATCTTTGTTAAAACATTAACAGGAAAAACTATTACTCTTGAAGTAGAAGCT 498 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGG 155926 ||||||| || || |||||| ||| || ||||| ||||| || Sbjct 499 TCTGATACAATAGAGAATGTGAAAGCTAAGATCCAAGACAAAGAGGG 545 >seq14 Length=11649563 Score = 86.0 bits (94), Expect = 9e-12 Identities = 100/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 155924 AGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAG 155983 ||| || || ||||| ||||||||||| || | ||| || || || | || ||| || Sbjct 1883801 AGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAACAATTAGAGGATGGTAG 1883860 Query 155984 AACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAG 156043 ||||||||||||||||||||| || || | || | ||||||||| || | ||||| Sbjct 1883861 AACTTTATCAGATTATAATATTCAGAAGGAATCTACATTACATTTAGTGCTACGTTTAAG 1883920 Query 156044 AGGCGGTG-TAAAA 156056 ||| || | ||||| Sbjct 1883921 AGGTGGAGCTAAAA 1883934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731820686624400