Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq172 163 6e-35 seq41 150 4e-31 seq1 138 2e-27 seq14 123 5e-23 seq3430 96.9 7e-15 seq15 96.9 7e-15 >seq172 Length=1724251 Score = 163 bits (180), Expect = 6e-35 Identities = 147/185 (79%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||||||||| || | || ||| |||| |||||||| || |||||||| || | | Sbjct 1092402 ATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAATAAGACGT 1092343 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||||||||| |||||||| || || || |||||| ||||||||| |||| | Sbjct 1092342 TGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTTCAATAGTA 1092283 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| | ||||||||| || || |||||||||||||| || ||||| | |||||||||| Sbjct 1092282 TCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAAATATCTGC 1092223 Query 192535 ATTTT 192539 || || Sbjct 1092222 ATCTT 1092218 >seq41 Length=919255 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||||| |||||| | || | ||| || || | || || ||||| |||||||| Sbjct 762308 CCACCTCGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAA 762367 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| || |||| ||||||||||||||||| ||||| || |||||||| || || || Sbjct 762368 AGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGA 762427 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| || ||||| ||||| ||| ||||| |||| ||| || | ||| ||| Sbjct 762428 ATTCCTTCCTTGTCTTGAATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACT 762487 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||| || ||||| || || | ||||| | ||| || |||||| Sbjct 762488 TCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 762535 Score = 140 bits (154), Expect = 6e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || || ||||| ||||| | || | ||| | ||| | || ||| || ||||||||||| Sbjct 762533 ATTCCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGA-ATATTATAATC 762591 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| | ||| ||| |||| |||| |||||||||||||||||| || || ||||| || || Sbjct 762592 AGAGAGTGTACGTCCATCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGG 762651 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || |||||||| || ||||| ||||| ||| || || |||| ||| || | ||| Sbjct 762652 AGGGATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTC 762711 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || ||||| || || | || || | || || ||||| Sbjct 762712 AACTTCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | ||| || | || | ||| | ||| | || ||| || ||||||||||| Sbjct 762761 ATACCACCACGAAGGCGAAGGACAAGATGAAGAGTCGATTCCTTTTGA-ATATTATAATC 762819 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || ||| | || || | ||| || ||||||||||| || || |||||||| || Sbjct 762820 GGAGAGCGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGTTGATCCGG 762879 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || |||||||| || ||||| ||||| ||| || || |||| ||| || | ||| Sbjct 762880 CGGAATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTC 762939 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || ||||| || || | ||| || | || |||||||| Sbjct 762940 AACTTCAAGTGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCAT 762990 >seq1 Length=17153651 Score = 138 bits (152), Expect = 2e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || | ||| | || |||||||| |||| |||||| ||| |||||||| Sbjct 7345293 ATTCCTCCGCGAAGTCTCAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCC 7345234 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || | |||||| ||||||||||| || | ||| || || || Sbjct 7345233 GAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 7345174 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || || ||| ||||| ||| | || || | ||| Sbjct 7345173 GGAATACCCTCTTTGTCTTGGATCTTTGCTTTAACATTCTCTATTGTGTCAGAAGCTTCA 7345114 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGA 192545 ||||| |||||||| ||||| || ||||| ||||||| || |||||||| || |||| Sbjct 7345113 ACTTCAAGAGTAATAGTTTTCCCTGTTAAGGTTTTAACGAAGATCTGCATGTTGCTAGA 7345055 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 192325 AATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCA 192384 || |||||||| | || | |||||| ||| |||||||| || | |||| | |||| Sbjct 7345503 AACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATCT 7345444 Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 || | |||||| ||||||||||| || | ||| || || || || || || ||||| || Sbjct 7345443 TCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTTTCA 7345384 Query 192445 TGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTT 192504 || || ||| ||| ||||| ||| | || | || ||||| | ||||||| | Sbjct 7345383 TGGATCTTAGCTTTCACATTCTCTATTGTGTCGGGAACATCAACTTCCAAGGTAATGGCT 7345324 Query 192505 TTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 |||||||| | ||||||| | | ||||||||| Sbjct 7345323 TTACCAGTAAGCGTTTTAACAGAGATCTGCATT 7345291 >seq14 Length=11649563 Score = 123 bits (136), Expect = 5e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||| | ||||| ||||||||||| |||| || || ||||||||||| ||| Sbjct 1883926 CCACCTCTTAAACGTAGCACTAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGAT 1883867 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || |||| |||| || |||||||| ||||||||||||||||| |||||||| ||||| Sbjct 1883866 AAAGTTCTACCATCCTCTAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGA 1883807 Query 192430 ATTCCT 192435 |||||| Sbjct 1883806 ATTCCT 1883801 >seq3430 Length=546 Score = 96.9 bits (106), Expect = 7e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 192433 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT 192492 || ||||| ||||| || ||| ||| ||||| ||| | ||| || | ||||||||| Sbjct 545 CCCTCTTTGTCTTGGATCTTAGCTTTCACATTCTCTATTGTATCAGAAGCTTCTACTTCA 486 Query 192493 AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGA 192545 |||||||| ||||| || ||||||||||||| ||| |||||||| || |||| Sbjct 485 AGAGTAATAGTTTTTCCTGTTAATGTTTTAACAAAGATCTGCATGTTGATAGA 433 >seq15 Length=11467329 Score = 96.9 bits (106), Expect = 7e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905 |||| || ||||| |||| ||||||||||| || | |||||||||||| ||||| |||| Sbjct 5182661 CCTCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTTTTT 5182602 Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965 | ||||| || || | |||||||||| |||||| ||||| || || ||||||| Sbjct 5182601 TCAGCCAGAAAATAGCAGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAAATG 5182542 Query 49966 C 49966 | Sbjct 5182541 C 5182541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984409250037150